HsaEX6085858 @ hg38
Exon Skipping
Gene
ENSG00000138658 | ZGRF1
Description
zinc finger GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr4:112617440-112623876:-
Coord C1 exon
chr4:112623817-112623876
Coord A exon
chr4:112620002-112620190
Coord C2 exon
chr4:112617440-112619690
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTGACATTTATTCTTTCAGGTG
3' ss Score
10.44
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCAATTTTATATGATGACAAAGGAGCATGTTTGGAGAGTCTGTTTCTTAAATGCCTTGAG
Seq A exon
GTGAAACCTGGAGATGACTTAGAAAGTGATCGATACTTAATCACAGTTGAAGAGGTTAAAGTTGCTGGAGCCATAGGTATTGTTAAGCAGAATGTCAATAAAGAAGCACCAGAGTTAAATTCAAGGACATTTATATCCTCTGGCCGATCTCTTGGATGTCAGCCCTCTGGCTTAAAAAGGAAGTTTACT
Seq C2 exon
GGTTTTCAAGGACCACGTCAGGTTCCAAAGAAAATGGTTATTATGGAAAGTGGTGAATCAGCTGCATCACATGAGGCTAAGAAAACTGGCCCTACTATTTTTTCTCCATTCTGCAGCATGCCTCCTTTGTTTCCTACTGTTGGCAAGAAAGATGTAAATAATATACTGGCAGACCCTGAGAACATTGTGACTTACAAGAACAGGGAGAGAAATGCCATGGATTTTTCTTCGGTTTTTTCTCCATCCTTCCAGATTAACCCAGAAGTGCTGTGTGAAGAAAATTATTTTTGCTCACCTGTCAATTCTGGAAATAAGCTTTCAGACTCTTTACTGACCAATGAGCCTGTGAAAAGAGATAGTTTGGCATCTCACTATTCAGGAGTTTCACAAAACATCAGAAGCAAAGCACAGATATTAGCTCTTCTGAAGTCCGAATCATCTAGTTCATGTGAGGAACTAAATTCTGAGATGACAGAGCATTTTCCTCAAAAACAACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658-'16-13,'16-12,20-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.446
Domain overlap (PFAM):
C1:
PF103824=DUF2439=FE(25.0=100)
A:
PF103824=DUF2439=PD(30.3=36.5)
C2:
NO
Main Skipping Isoform:
ENST00000505019fB30533
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCATGTTTGGAGAGTCTGT
R:
TGGCATTTCTCTCCCTGTTCT
Band lengths:
256-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains