GgaEX6035134 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr4:58666302-58668676:+
Coord C1 exon
chr4:58666302-58666358
Coord A exon
chr4:58666794-58666979
Coord C2 exon
chr4:58667699-58668676
Length
186 bp
Sequences
Splice sites
3' ss Seq
ATTGCATTCTCTTTTCCTAGGTG
3' ss Score
9.85
5' ss Seq
ACAGTATGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GCAATCTTGCTGGATGATAAAGGACAATACTTGGAGAGTATGTTTATAAAATCCCAG
Seq A exon
GTGAATCCTGGAGATAATTTAGAAAGTGAACGATATCTGATCACAGTTGAAGAAGCAAAAATGAAGGAAAAATCTTGCGAAGATCAACCAAGGAAAGCTGAAGTAGTAGATGTGAATAGACGTGGTGTAAAGCCTGGAGTTCTACCTTCAAGGCATCTGTCTGTTGGCTTAAAGAGGAAGTTTACA
Seq C2 exon
GGTTTCCAAGGGCCACGTCAGGTTGAAAAGAAAGTATCGACAGTAGAAGATGGAGAAGGAGTGGCAGCATTGCCTATATCTGAGCAGAGTCGAGATCCTTTTCCATCCAGGTTTTATATTACCTCTCCCTTATTTTCTACTGTTTACAAGAAGAATGCAGAAACAAATCTATGTACAGACTTGCATGAAGGTGGAGGTACAGATAACAGAGATCATGTGACTCCCTCCTCAGTGGTTTCATTTCCATTTCTTCATACGCATAATGAAACTGAGAAGAAAAATTCTGATCAGTCCATGGTAAAGCCAGAGTCTCCTGTATTTAGTGGGCACACCAAATCTAGTAGTTGGACAGCTGGTCATGGGGCAGTGTCACAGAACATCAGGAGCGCTGCACAGATCATAGCTCTTTTGAAATCTAAAACAACACAAGTCTGCAGAGAGCAAGCAACATCTGAAGTCACAGAATGTCATAGATCTCAAGCACTGGAAAACATAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012063-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.355 C2=0.561
Domain overlap (PFAM):
C1:
PF103824=DUF2439=FE(23.1=100)
A:
PF103824=DUF2439=PD(33.3=41.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCTGGATGATAAAGGACA
R:
ACCTCCACCTTCATGCAAGTC
Band lengths:
251-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]