BtaEX0001015 @ bosTau6
Exon Skipping
Description
Bos taurus zinc finger protein 582 (ZNF582), mRNA. [Source:RefSeq mRNA;Acc:NM_001105026]
Coordinates
chr18:63977614-63981854:+
Coord C1 exon
chr18:63977614-63977705
Coord A exon
chr18:63980073-63980199
Coord C2 exon
chr18:63981759-63981854
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGGTCTTTGTGTTATTTCAGGAC
3' ss Score
7.91
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
CCTTACCCTCCCAGGACAGTGCTGTTCTCCAAGAGAGAAGCCAGGAAAAGAAGGTGAAAATGACAGTGCAACTAGTGAAAGCCATACCCCAG
Seq A exon
GACCTGGTGACGTTCAAGGATGTGGCAATAGACTTCTCCCAGGAGGAATGGGAATGGTTGAGCCCTGCTCAGAGAAGTTTGTACAGGAGTATGATGTTGGAGAACTATCAGAGCCTGGTATCACTGG
Seq C2 exon
GACTTTGTATCTCTAAGCCATATGTCATCTCCTTATTGGAGCAAGGGAAAGAGCCCTGGATGGTGCTGGAGAATGAGATGAGAAGCCCATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030348_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTACCCTCCCAGGACAGTG
R:
TGGAAATGGGCTTCTCATCTCA
Band lengths:
187-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development