HsaEX0073758 @ hg38
Exon Skipping
Gene
ENSG00000196263 | ZNF471
Description
zinc finger protein 471 [Source:HGNC Symbol;Acc:HGNC:23226]
Coordinates
chr19:56511517-56518577:+
Coord C1 exon
chr19:56511517-56511604
Coord A exon
chr19:56516275-56516401
Coord C2 exon
chr19:56518482-56518577
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAATATATTTGTCACTTCAGGAC
3' ss Score
6.46
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
CCTTGCCCTCCCAAGACACTGTTCTTCAAGAGAAAGACCAGAAGAGAAGGCAAAAATGAATGTTGAAGTAGTAAAAGTCATGCCCCAG
Seq A exon
GACTTAGTGACATTCAAGGATGTGGCAATAGATTTTTCCCAGGAAGAATGGCAATGGATGAACCCTGCTCAGAAGCGTTTATACAGGAGTATGATGTTGGAGAACTATCAGAGCCTGGTATCACTTG
Seq C2 exon
GTCTTTGCATTTCTAAGCCATATGTGATCTCCTTATTGGAGCAAGGGAGAGAGCCTTGGGAGATGACGAGTGAGATGACAAGAAGCCCATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196263_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCTCCCAAGACACTGTT
R:
CTGAGAATGGGCTTCTTGTCA
Band lengths:
182-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development