BtaEX0001051 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKG0]
Coordinates
chr7:16607764-16608808:-
Coord C1 exon
chr7:16608766-16608808
Coord A exon
chr7:16608042-16608133
Coord C2 exon
chr7:16607764-16607820
Length
92 bp
Sequences
Splice sites
3' ss Seq
GGGGTCTGGGGGCTCCTCAGGCT
3' ss Score
2.48
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGGCTGGTGCAGCTGATGACTGAAGACAAGCACACGATGGGCG
Seq A exon
GCTTCATCCCTGGATTCCCAAAAATGCCAAGGTTCCAGGCCCATCACAAGCACATTCTCGGCAGAGCCCTCCCCAAGTTGAAGGGACATGTG
Seq C2 exon
CCGATGTCTGCGGGGATTTACACACCCACGTGGTTCATGCAGTGCTTCATCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032364-'12-9,'12-8,13-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(6.8=100)
A:
PF0056613=RabGAP-TBC=FE(14.6=100)
C2:
PF0056613=RabGAP-TBC=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCAGCTGATGACTGAAG
R:
TGGTTGATGAAGCACTGCATGA
Band lengths:
95-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development