BtaINT0006362 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKG0]
Coordinates
chr7:16607764-16608133:-
Coord C1 exon
chr7:16608042-16608133
Coord A exon
chr7:16607821-16608041
Coord C2 exon
chr7:16607764-16607820
Length
221 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CCACCTGCCCTGCTTTACAGCCG
3' ss Score
9.05
Exon sequences
Seq C1 exon
GCTTCATCCCTGGATTCCCAAAAATGCCAAGGTTCCAGGCCCATCACAAGCACATTCTCGGCAGAGCCCTCCCCAAGTTGAAGGGACATGTG
Seq A exon
GTGAGTACAACTGTCGCCCCGCCCAGAGGTGCTGTCCCATGGCCACTGCGGGGACTTGGCTTCCTGCAGACTTCATTTGCCTTCTCCTGGGGGCTGCCAGGGGTGAGCTCGGGCTGAGAAGGCCCATCCACCACCCCTGAGGGTGGCTGTACAGGGCCCTCAAATAGGGAGGTTTCTGGCAGGGCAGGCAGGCCCTGAGCACCACCTGCCCTGCTTTACAG
Seq C2 exon
CCGATGTCTGCGGGGATTTACACACCCACGTGGTTCATGCAGTGCTTCATCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032364:ENSBTAT00000045920:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(14.6=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCATCCCTGGATTCCCAA
R:
TGGTTGATGAAGCACTGCATGA
Band lengths:
148-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]