BtaEX0001136 @ bosTau6
Exon Skipping
Description
Bos taurus complement component 4A (C4A), mRNA. [Source:RefSeq mRNA;Acc:NM_001166485]
Coordinates
chr23:27193439-27194628:-
Coord C1 exon
chr23:27194496-27194628
Coord A exon
chr23:27193726-27193841
Coord C2 exon
chr23:27193439-27193615
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCCATCCTGTATCTTGCAGGAG
3' ss Score
9.59
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
Exon sequences
Seq C1 exon
CTGGTGGATGGCCAGTGCCAAATTTCCCTGCAAAAGGCTGAGTTTCAGGGTGTGCTGGAGAAGCTTAATATTAGCACTGATGACCTCCCAGGGCTGCGCCTGTATGTTGCAGCAGCTGTTATTGAGTCTCCAG
Seq A exon
GAGGAGAGATGGAGGAGGCAGAGCTCACGTCCTGGCGTTTCATGTCATCTCCCTTCTCCCTGGATCTAAGCAAAACCAAGCAGCAGCTTATACCTGGGGTCCCCTTCCTGCTGCAG
Seq C2 exon
GCCCTGGTCCGTGACATGTCAGGCTCCCCAGCCTCTAGCATTCCCGTCAAAGTGTCTGCCAAGTTGTTTTCTGGATCGACTTCTAAAAACCAGGACTTTGAACAGAACACAGATGGGAGCGGCCAAGTCATTGTCTCCATTGGTGTTCCTCGGACCATCTCAGAAGTGCAGCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037533_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTCAGGGTGTGCTGGAG
R:
AGATGGTCCGAGGAACACCAA
Band lengths:
254-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development