HsaEX0010966 @ hg38
Exon Skipping
Gene
ENSG00000244731 | C4A
Description
complement C4A (Rodgers blood group) [Source:HGNC Symbol;Acc:HGNC:1323]
Coordinates
chr6:31984276-31991586:+
Coord C1 exon
chr6:31984276-31984408
Coord A exon
chr6:31991192-31991307
Coord C2 exon
chr6:31991407-31991586
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCCTTTGTCTTGCAGGTG
3' ss Score
13.24
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
Exon sequences
Seq C1 exon
CTGGTGAATGGACAGAGCCACATTTCCCTCTCAAAGGCAGAGTTCCAGGACGCCCTGGAGAAGCTGAATATGGGCATTACTGACCTCCAGGGGCTGCGCCTCTACGTTGCTGCAGCCATCATTGAGTCTCCAG
Seq A exon
GTGGGGAGATGGAGGAGGCAGAGCTCACATCCTGGTATTTTGTGTCATCTCCCTTCTCCTTGGATCTTAGCAAGACCAAGCGACACCTTGTGCCTGGGGCCCCCTTCCTGCTGCAG
Seq C2 exon
GCCTTGGTCCGTGAGATGTCAGGCTCCCCAGCTTCTGGCATTCCTGTCAAAGTTTCTGCCACGGTGTCTTCTCCTGGGTCTGTTCCTGAAGTCCAGGACATTCAGCAAAACACAGACGGGAGCGGCCAAGTCAGCATTCCAATAATTATCCCTCAGACCATCTCAGAGCTGCAGCTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000244731_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.283
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGAATGGACAGAGCCAC
R:
CTCCCGTCTGTGTTTTGCTGA
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development