BtaEX0001154 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr22:16475036-16476868:+
Coord C1 exon
chr22:16475036-16475514
Coord A exon
chr22:16476451-16476583
Coord C2 exon
chr22:16476706-16476868
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTAACCCACACCCAGGTC
3' ss Score
6.06
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTCTTACAGATGATGTTCTTCGAACTCTAAGGAAAAAGTCAAGCAAGGATTGAGGGACCCTGGAGAGGAACCTGTCTTAAATGGCAACAATGACAAGAGAAAATTGGGCCCACAATGCTCTGCGACAAGAGGGCCTTGTTAAAGGGAAGGATGATACCTGGAAGTGGGGAACCAGCTTCCAAGGGAGTAGCTCCACTGTTTGGGAGACCTCCCACCTGCACTTTAGACAGTTACGTTATCATGAGACATCTGGACCCCAGGAGGCACTGAGCCGGCTCCGGGAGCTCTGTCGCCGGTGGCTGAGGCCGGAAGCACGCACCAAGGCCCAGATCTTGGAGCTACTGGTGCTGGAGCAATTCCTGAGCATCCTGCCTGGAGAGATACGGACCTGGGTGCAGATCCATCGGCCCGGGAGTGGTGAGGAGGCCGTGGCCCTGGTAGAAGAGCTGCAGAAAGACCTTGATGGACCAACATTAAAA
Seq A exon
GTCTGGCTTCTGTTTCTACCGTTCTGTTCAGTCTCCTCTGGGAAAGGTCACCAGTACCATGAATGGGGCTAGAGGGCAGCTCCATTGTTCTCAAGGCAAAGCTTTCCTGCTGTTTTGATGCTCCATATTTGAG
Seq C2 exon
GTTCCAGCCTTTGTCCAGGACCAGGACACTCTCCAGGAGGGTCTGAGTACTCCAGGAATAGCACTTCCTCATGCACCCACTGGCAGCCACATATCAGCTGAAATTCGCTCAAATTCTCTTACTGACCCAGTGGTGTTTGGCTTGCTCCAGGATCCTCAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037803_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.327
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.3)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
ENSBTAT00000055475fB200
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGATACGGACCTGGGTG
R:
ATCCTGGAGCAAGCCAAACAC
Band lengths:
258-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development