HsaEX0073162 @ hg19
Exon Skipping
Gene
ENSG00000186448 | ZNF197
Description
zinc finger protein 197 [Source:HGNC Symbol;Acc:12988]
Coordinates
chr3:44670566-44672713:+
Coord C1 exon
chr3:44670566-44671036
Coord A exon
chr3:44672306-44672438
Coord C2 exon
chr3:44672554-44672713
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTAACCCACACCCAGGTC
3' ss Score
6.06
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATGATACTCTCCAAGCTGTAAGGAAGAAGTCAAGGATTAAGGAGACCTGGACTGGAGAGGAGCCTTTTTCAAAAAACAACAATGACAAGAGAAAATGTAGCCCACAATGCTCTGAGACAAGAGGGCCTTGTGAAGGGGAAGGATGATACCTGGAAATGGGGAACCAGCTTCCAAGGAAGTAGCTCCTCTGTTTGGGAGACCTCCCACCTACACTTTAGACAATTACGTTACCATGAGACATCTGGACCCCAGGAAGCCCTGAGCCGGCTCAGGGAACTCTGTCGCCGGTGGCTGAGACCAGAAGCACGCACCAAGGCACAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTTCTGAGCATCCTGCCTGGGGAGATTCGGACCTGGGTACAGCTCCATCACCCTGGAAGTGGCGAGGAGGCTGTGGCCCTGGTAGAGGAGCTGCAGAAAGACCTTGATGGACCAGCAATACAA
Seq A exon
GTCTGGCTTCTGTTCCCACCGTTGTGTACAGTCTCCTCTGGGAGAGGTCACCAGTGCCATGAGTGGGGCTCGAGGGCAGCTCCATTGTTCTCAATGCAAAGCTTTACTGCTGTTTTGATGCTCCATACTTGAG
Seq C2 exon
GTTCCAGTCCTTGTCAAGGATCAGGACACTCTCCAGAAGGTGGTGAGTGCCCCAGGAACAACACTTCCTCCTGTACTTCCTGGCAGCCACATAGCAGCTGAAATTTGCCCGCATCCTCCTACTGACCTAGTGGCATTCAACCTCCAGGATCCTCAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186448_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.231
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.3)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTTTCTGAGCATCCTGC
R:
GATGCGGGCAAATTTCAGCTG
Band lengths:
243-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)