BtaEX0001213 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MCD3]
Coordinates
chr7:8472803-8490669:-
Coord C1 exon
chr7:8490442-8490669
Coord A exon
chr7:8485216-8485269
Coord C2 exon
chr7:8472803-8473073
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATGGTCCTCTTTCATGTCAGCTG
3' ss Score
7.11
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GACTCACTCTGCACCCCATCTGACCACAGGATGCTGGAGCTCAGCCTATCCTGGCTGGGACTCAGGCCGGTGGCAGCCTCTCCGTGGCTGCTGCTGGTGCTGGTTGGGGCCTCCTGGATCCTGGCCCACGTCCTGGCCTGGACTTACACCTTCTACAACAACTCTCGCCACCTTCAGTGTTTCCCACAACCACCAAAACGCAACTGGTTCTTGGGTCACATGGGCCAG
Seq A exon
CTGCTGCTGCACCCAAGGATGTGATCTTCTATGACTTTCTGAAGCCTTGGCTGG
Seq C2 exon
GAAGCCCAATGAATATATTGCCAGCATCTTGGAGCTCAGTGCGCTTGTGGCAAAGCGGAACCAGCAGATCTTCTTGCACATGGACTTTCTGTACTTCCTCACCCCAGACTGGCGGCGCTTCCGCAGGGCCTGCCGCCTGGTACATGACTTCACAGATGCAGTCATTCAGGAGCGGCGCCACACCCTTCCCAGTGAGGGTACTGATGACTTCCTCAAGGCCAAGGTGAAGACCAAGACTTTGGACTTCATCGATGTGCTTCTGTTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038549_MULTIEX2-2/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.0=19.7)
A:
PF0006717=p450=FE(3.9=100)
C2:
PF0006717=p450=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAACTCTCGCCACCTTC
R:
AGATCTGCTGGTTCCGCTTTG
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development