MmuEX0021228 @ mm9
Exon Skipping
Gene
ENSMUSG00000062464 | Gm9705
Description
predicted gene 9705 [Source:MGI Symbol;Acc:MGI:3780112]
Coordinates
chr17:32762067-32764810:+
Coord C1 exon
chr17:32762067-32762211
Coord A exon
chr17:32764542-32764595
Coord C2 exon
chr17:32764683-32764810
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTCCTCCATGACAGCTT
3' ss Score
8.12
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATTGAGCACAATGAGGAAGGCATGCAGCTGATGACTGAAGCAGGCCAGACTTACCGAGATGTCCATCTCTGTTGGCTGGGACCAGTGATCCCTGTGCTGAGGATTGTTGACCCTGCATTTGTTGCCCCCCTGCTCCTGGCCTCAG
Seq A exon
CTTTGGTGGCCCCAAAGGACACGACTTTCCATACCTTTGTGAAGCCCTGGCTGG
Seq C2 exon
GGGATGGGCTCTTCCTGAATTCAGGTGACAAGTGGAGCCGCCATCGCCGTCTGCTGACACCTGCCTTCCACTTTGACATCCTGAAGCCCTATGTGAAGATATTTAACCAGAGTGTGAACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062464-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
71%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(3.9=100)
C2:
PF0006717=p450=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATCCCTGTGCTGAGGAT
R:
GTCAAAGTGGAAGGCAGGTGT
Band lengths:
139-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: