BtaEX0001215 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MCD3]
Coordinates
chr7:8471741-8483385:-
Coord C1 exon
chr7:8483264-8483385
Coord A exon
chr7:8472803-8473073
Coord C2 exon
chr7:8471741-8471807
Length
271 bp
Sequences
Splice sites
3' ss Seq
TTCATGCTCTCATCCTTCAGGAA
3' ss Score
10.8
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GCCAAGTGGCAGCGTCTGATCACAGAAGGCCACACCCATCTGGACATGTTTGAACACATCAGCCTCATGACCCTGGACAGTCTGCAGAAATGTGTCTTCAGTTATGACAGCAATTGCCAAGA
Seq A exon
GAAGCCCAATGAATATATTGCCAGCATCTTGGAGCTCAGTGCGCTTGTGGCAAAGCGGAACCAGCAGATCTTCTTGCACATGGACTTTCTGTACTTCCTCACCCCAGACTGGCGGCGCTTCCGCAGGGCCTGCCGCCTGGTACATGACTTCACAGATGCAGTCATTCAGGAGCGGCGCCACACCCTTCCCAGTGAGGGTACTGATGACTTCCTCAAGGCCAAGGTGAAGACCAAGACTTTGGACTTCATCGATGTGCTTCTGTTGACCAAG
Seq C2 exon
GATGAAGATGGGAAGGGATTATCAGATGAAGATATCCGGGCTGAAGCTGACACCTTCATGTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038549_MULTIEX2-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.6=100)
A:
PF0006717=p450=FE(19.4=100)
C2:
PF0006717=p450=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTGGCAGCGTCTGATC
R:
CCTCAAACATGAAGGTGTCAGCT
Band lengths:
188-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development