HsaEX6093626 @ hg38
Exon Skipping
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450 family 4 subfamily F member 8 [Source:HGNC Symbol;Acc:HGNC:2648]
Coordinates
chr19:15622219-15623765:+
Coord C1 exon
chr19:15622219-15622340
Coord A exon
chr19:15623105-15623375
Coord C2 exon
chr19:15623699-15623765
Length
271 bp
Sequences
Splice sites
3' ss Seq
TCTCTGGACTGGCCCTGCAGGAA
3' ss Score
7.2
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GCCAAGTGGCAACGCCTGGCCATGGAGGGCAGCACCTGTCTGGATGTGTTTGAGCACATCAGCCTTATGACCCTGGACAGTCTGCAGAAATGCATCTTCAGCTTTGACAGCAATTGTCAGGA
Seq A exon
GAAGCCCAGTGAATATATTACTGCGATCATGGAGCTCAGTGCCCTTGTAGTGAAACGGAATAACCAGTTCTTCCGGTACAAGGACTTCCTGTACTTCCTCACTCCCTGTGGACGGCGCTTCCACAGGGCCTGCAGACTGGTGCACGACTTCACAGATGCCGTCATCCAGGAGCGGCGCCGCACCCTCACTAGCCAGGGTGTTGATGACTTCCTCCAAGCCAAGGCCAAGTCCAAGACTTTGGACTTTATTGATGTGCTCCTGCTGAGCGAG
Seq C2 exon
GATAAAAATGGTAAAGAGTTGTCAGATGAGGACATAAGAGCAGAAGCTGACACTTTCATGTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526-'9-13,'9-11,11-13=AN
Average complexity
A_S
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(19.4=93.8)
A:
PF0006717=p450=FE(19.4=100)
C2:
PF0006717=p450=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGCCTGGCCATGGAG
R:
CTCCAAACATGAAAGTGTCAGCT
Band lengths:
180-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains