BtaEX0001221 @ bosTau6
Exon Skipping
Description
Bos taurus major histocompatibility complex, class I (LOC512672), mRNA. [Source:RefSeq mRNA;Acc:NM_001076841]
Coordinates
chr23:28307093-28311309:+
Coord C1 exon
chr23:28307093-28307131
Coord A exon
chr23:28307639-28307911
Coord C2 exon
chr23:28310652-28311309
Length
273 bp
Sequences
Splice sites
3' ss Seq
CTATGCTGACTCTGTTGCAGGTG
3' ss Score
9.46
5' ss Seq
TAGGTGTTG
5' ss Score
-1.07
Exon sequences
Seq C1 exon
TCTAAGAGAACGGCTTTGTCTGGAACTGAGTGATACAAG
Seq A exon
GTGGGGCAGGAGAAGGCTGTGAGGAGCTGAGTGTGGACGGGGCCTGGGCCCAGTCAGAGCATCATGGGCTTTGATATGGTCGCTGCTGTTATCATCCTCTCAACATCTTTGTCCTTGTCTCTTCAGTAGAACCTTGTCTCACCAGGACCTGTGATCACAAGGACTGAGACATCACCTGAACCTTGTCTTCTGGACTGTGGGCAGTGAGGACCTTATGTGGCCGGGTCAACCAGGGCTCAGGACTGGGTCTGGTTCTCAGTCCTCATCTTTTAG
Seq C2 exon
GGACTGAGTCAGCACATTCGGGAACAAAATTTTTGATGCTTTTCTAAGCTGAGTTACATACAGGAACCACTGCTCTGTTGCTGGACACAGTTGCCTTTGTTACGACGACACCCGTGATGCTGGACACTCAACTGTGTGGCTAGAACTGCTATCACTATTGCTCTTGACAACTGAATGTCACTACTGCCACTCACCACCTTTGGCAAATGCCTTGTGCACACACCCAGCAAATATGTGTCATTATGTCCAGAGTCACAACTCAGCATGTGTTATGTGACTAAGAGTGCCTCTCTTTCCCAGCTGTGTATTTGGGGAATTGAGTTTTCCTCTCTCATGGAAGGACGTAGTGTCTGTCTTTCAAGACTCTTTCATGTTGCAGCTGATATCACAGAAATACAAAGGAGTATGAAAGAGGACTCTGAATGATTATACAGCAAACAAACTGGAGGAACTAGAAGAAATGGGTTTATACAACCTGCCAAGACAATCATGAAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038619_MULTIEX1-6/7=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTTTGTCTGGAACTGAGT
R:
AACACATGCTGAGTTGTGACT
Band lengths:
300-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development