BtaEX0001227 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr18:60336433-60341741:+
Coord C1 exon
chr18:60336433-60336496
Coord A exon
chr18:60336646-60336744
Coord C2 exon
chr18:60341615-60341741
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCATCTCCCTGCAGATT
3' ss Score
12.53
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AATAATCTTACCTGAAGAATCTAAGAAGAAAAAGAGGAAAGAAGGAAGAATGGAGCTTTCCCAG
Seq A exon
ATTGATCTTCACTGTGACCCAGTGACCTAGAACTTAAGGAAGAGTGTCCTTTTAGGTGATCCTCCTGTGAAAGGTTTTGTTCTCAGGCGTGGATTGGAG
Seq C2 exon
GGACTGTTTACATTCAAGGATGTGGCTGTAGAATTCACTCAGGAAGAGTGGGAATGCCTGGATCCTATTCAGAGGGCCTTGTACAGGGATGTGATGCTGGAGACCTACAGGAACCTGCTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038674_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSBTAT00000054535fB207
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAAAAGAGGAAAGAAGGAAGA
R:
CAGGGAGAGCAGGTTCCTGTA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development