BtaINT0007609 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr18:60336433-60341741:+
Coord C1 exon
chr18:60336433-60336496
Coord A exon
chr18:60336497-60341614
Coord C2 exon
chr18:60341615-60341741
Length
5118 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
GGTGAAATGTTTCCTTTCAGGGA
3' ss Score
7.68
Exon sequences
Seq C1 exon
AATAATCTTACCTGAAGAATCTAAGAAGAAAAAGAGGAAAGAAGGAAGAATGGAGCTTTCCCAG
Seq A exon
GTAAAAATCATAGTCTTTGTTGATCTGTTAACTCTTTCCTAAAAAGACAAGATTTGGACTTGTTAAACTTCTCTATCCATGAAGTTTCCTGCCTAAAATATTTAATCACACACAGGGCCTTCCCTGAATCTCCTCTCATCTCCCTGCAGATTGATCTTCACTGTGACCCAGTGACCTAGAACTTAAGGAAGAGTGTCCTTTTAGGTGATCCTCCTGTGAAAGGTTTTGTTCTCAGGCGTGGATTGGAGGTGAGAGTAGGCTCTGTGGTGTCAGTGACGTACGGTAGTAAGGATTGTTCAGAAAACCCTTCTGCATGCCCTTTCAGCTCCATGTAAACCAAAGAGGCTACATATAAGCAATGTACTGGTTGGCCAAAAAGTTCGTTCAGATTAGAAAAACTCAAATGAACTTTTTGGCCAATGGAATACTAATGTAGGTAAATACCCGAGGAGGTGTAGAATGAAAGACTGATGGGGAAACATGCTTTTCGAGATTTTAAAAGTTAAAAAAGTGAATCAGTATGTTTCTGGCTCTAAAATATTTCTGTACACTAGCAATAAACAACTTGAAAGTAAGTAAAAATGCAAACTAGTACAGCCACTATGGAGAACAGTGTGGAGATTCCTTAAAAAACTGTAAATAGAACTGCCTTATGATCCAGCAATCCCACTGCTGGGCATACACACTGAGGAAACCAGAAAGGAAAGAGACACGTGTACCCCAATGTTCATCGCAGCGCTGTTTATAATAGCCAGGACATGGAAGCAACCTAGATGTCCATCAGCAGATGAATGGATAAGAAAGCTGTGGTACATATACACAATGGAGTATTACTCAGCCATTAAAAAGAATACATTTGAATCAGTTCTAATGAGGTGGATGAAACTGGAGCCTATTATACAGAGTGAAGTAAGCCATAAAGAAAAGCACCAATACAGTATACTAACGCATATATATGGAATTTAGAAAGATGGTAACAATAACCCTGTGTACGAGACAGCAAAAGAGATACTGATGTATAGAACAGTCTTATGGACTCTGTGGGAGAGGGAGAGGGTGGGAAGATTTGGGAGAATGGCATTGAAACATGTATAATATCATGTATGAAACGAGTCGCCAGTCCAGGTTCGATGCATGATACTGGATGCTTGGGGCTGGTGCACTGGGACGACCCAGAGGGATGGTATGGGGAGGGAGGACGGAGGAGGGTTCAGGATGGGGAACACATGTATACCTTTGGCGGATTCATTTCGATATTTGGCAAAACTAATACAATATTGTAAAGTTTAAAAATTAAATAAAATTTTAAAAAAAAAGAAAGTAAGTAAAACAGTTGCCTTCACAAGACCATCAGAAAGAGTGAGAATTAATTTAAGGAACTGGAAGATTCATACAATGAAAACTACAAGTATTGATGCAAGAGTTGAAAGAAAAATAAATGTCAAGATATTCTGTGATTGCTGATTGGAAGACTTAGAGTAGTTAAGATGGCAGTACTTGCCAGAGTGTTAGAAAGATTCAGAACAATCCCTGTCAGAATCCCACCAGTCAATTTTGTACAAATGTGACCCTGGTCCTAAAATTCATTTTGAATAAGTGTGGCTCCCAGACAGCCAAAATAAATGTGAAAAAGAACAGAGTTGGAGGGCAGCATCAAACCATACTACAAACCAGGGGTAAACAAATCTGTGTTTTTAGCATGAGAAGGGTAATATAGATCAAAGTGATAGACTGAGTCCATGAGCAAACCCATCCATATTTCTTTTTTCTTTTTTAATTAATTAATTATTTGGCTGTGTTGGGTCTTAGAGGTGGCACATAGGCTTCTCTCTAGTTTTGGTGCTCAGGCTCCAGAGTGAGTGGTCTTAGTTGCCCCACAACATGTGGGATTTTACTTCCCTTACCAGGGATTGAACCCCGGTCCCCTGCATTGGAAGGTGGATTCTTAGCCACTGGACTCCCAGGGAAGTCCCAGTCTATTCCTCTTTTTGAAAGAATGCCAGAAACATTCACAGAAAAAGAGTATCTGTTTTTTTTTTTTTTTTCTTAAAAGAGTAGTCTCTTTAAAAAAATTGAAGTGTAGTAGACTTCAGAAGTGTAGATTCACAATGATTTGTCAATGTCTGGTGTACATTAAAGTACATTAAAGTGTGTATATATATATATATATATATATACACACACACACACATACACACACACACACACATTATTTTTTATATTCTTTTCCATTATGGTTTATTATAAGATATTGATGATAGTTCTCTGTGCTGTACAGCATGACCTTGTTATTTATCCATTCTCTATAGAATGGTTTGCATCTGCTAATTCCAAACTTTCAATCCATTCTCCCCATCCCACCTCCCCCCTGGCAACCACAAGTCTGTTCTCTGTTGGCGAATTTGTATCAGTTTGATAGATAGGTTCATTTGTGTTATATTTTAGAATCCACATATAAGTGATATGGTATTTGTCTTTCTCTGAGTTATTTAGTATGATAATCTCTAGATGCATCCATGGTCTTGCAACTGAAATGGCTTCATTCTTTTTATGGCTGCATAGTATTCCATTGTATGTATGCATGACATCTTGTTTAGCCATTCATCTGTCAGTGGACATTTATGTTGTTTGCATGTCTTGGCTATTGTGAATAGTGCTGCTTTGAACACAGGGGTGCATGTATCTTTTTGAATTATAGTTTTGTCCACATATATTTCCAGGGAGTGGGATTGCTGGATCATATGGCAACTCTATTTTTAATTTTTTGAAGAACCTTCATACTGTTTTTCCATAGTGGCTTTGTCAGCTTACATTCCTACCAACAGTGTAGGAGGGTTCCCTTTTCTCCACACTCTCTCGAGCATTTCTCATTTGTAGATTTTTTAACAATGACCATTCTGATCAGTGTGAAGTGAGGTACCTCATTTTTAGTTTTCGTTTGTATTTTTTTTGATAATTAATGATGTTGAGTGTCTTTTCTGGAGAAGGCAATGGCACCCCACTCCAGCACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTCGTGGGCTGCCGTCTATGGGGTCAGAGTCGGACATGACTGAAGTGACTTAGCAGTGTCTTTTCAAGTGCCTTTTGCCCATCTGTATGTCTTCTTTCACGAAATGTCTGTTTAGATCTTCTGCCCATTTTTCGATTGGGTTGTTTTGTTTGTTTTTGAATTGTGTGAGATATCTGTATATTTTGGAAATTAAGTACCTGTTGGTTGCATCATTTGCAGGTATTTTCTCTTGGTCTGTAAGTTGTCTTTTTTCTTTTGTTGATGGTTCCCTTTGTTATACAAAACCTCATAAGTTTGATTGGTCCCATGTGTTGATGTTCACTTTTACTTCTATTGCTTTGGGAGGCAGACCTAAGAGAAATAATTTTTTGGTTCAGCCATGTTATAGTATGTATCAATACTGCATTCCTTGTCACATCTAAAGTGGGCCTCTTGTAGGCAGTATATGATGTGCTCAAGGTTTTCAAGCCAGTCTGTCACTCTGTGTCTTCTAGTGGAGCATTCAAGTCCATTGACATTACAGGTAATTATTAATAGATAGGTATATACTGCCAATTTAAACCTTGTTTTCCACTTGATTCTGTATTTCTTTTTTTTTTTTTTTTTCCTATTTCTCCTTTTGCAGTTTGATGATTTCCTATTATATTATGCTTGTGTTCTGTTCCTTTTGGTTTTTGTGAAATAGTTTTTGATTTATGGTTATCCTGTTTTTCAAGTATGTTAACCTCTTCCTGTATCTACTTTCTTTAGGCTGATAGTCATATAGACTTAAACACACTTTTTGTTAAAAAAATTAACAAATCTACATTTTCTCCTGGATTGGAAGAATGAATATGGTTTAAATGGCCAAACTACTCAAATACATCTACACATTTAATATGATCCATATCAAATTACCCATGACATTTTTCACAAAAGTAGAACAAATAATCCTAAGAAATCAGACAAAAGGTTACATTTTATACTATTCTACTTATATGCAAATATCCCAAGGAGGTACATCTATTGAGATAAAGCATTAGTGGTGTCCAGGGACTGATAGCAAATGGGGAAGAAAGAAACAACTGCTGAATGGGTAAAAGATTTCCTCTGGGGACAACTGAAATATTTTTGAACGAGAAAGAGGTGATGTTCAACATTGTAAATGTACTAAATGTCACTGAATGGTCCTTTCAGTTCAGTTGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGAATCGCAGCATGCTAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACTCAAGCTCACGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCTTCTGTCGTCCCCTTCTCCTCCTGCCCTCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAGCTCTTCACATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAACACCCAGGACTGATCTCCTTTAGAATGGACTGGTTGGATGCCCTTGCAGTCCAAGGGACTCTCAAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCTGCGCTCAGCTTTCTTCACAGTCCAACTCTCATATCCATACATGACTACTGGAAAAACCATAGCCTTGACTAGATGGACCTTTGTTGGCAAAGGAACGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTACAGTCACCATCTGCAGTGCTTTTGGAGCCCAAAAAAATAAAGTCTGACACTGTTTCCACTGTTGCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAGCTTTTTCACTCTCCTTTAAAAGTGGCTAACTTTGTTAATATGAATTTCACCTCAGTTAAAAAAAAATTGGAGGATTGTAACTTGCTCAGAATTATCTTATATAGATCACTCAGAACATTCATTCCAGCCAAGCCAGTCCTTACACGTCTGATTCTGTAAGACTGATTTTCAGAACTCTCTCCCTATTCATTTGGTGAAATGTTTCCTTTCAG
Seq C2 exon
GGACTGTTTACATTCAAGGATGTGGCTGTAGAATTCACTCAGGAAGAGTGGGAATGCCTGGATCCTATTCAGAGGGCCTTGTACAGGGATGTGATGCTGGAGACCTACAGGAACCTGCTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038674:ENSBTAT00000054535:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development