BtaEX0001433 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MB40]
Coordinates
chr18:60239071-60243938:-
Coord C1 exon
chr18:60243862-60243938
Coord A exon
chr18:60239499-60239589
Coord C2 exon
chr18:60239071-60239197
Length
91 bp
Sequences
Splice sites
3' ss Seq
TGTAATTGTCATAATTGCAGATT
3' ss Score
7.2
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATTGACTTCCAAAGACTCAGACTGAGGAAGAAGCCTGGAAGAGCAAAGAAAAGGAGTCAGGAATGGCTATTTCTCAG
Seq A exon
ATTTTGACCTTTCTGTAAAGCCATTGTGGACTTTGTCATCTCTGAAGATCCCACTGGTGCTGTAGCTCATCTAGATATTGAATATCACATG
Seq C2 exon
GAACAGTTGACCTTCAAGGATGTTGCTGTAGAATTCTCTCAGGAGGAGTGGGAATGCCTGGACCCTGCTCAGAGGGCCTTTTACATGGATGTGATGGTGGAGACCCTCAGGAACCTGATCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045985_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSBTAT00000054265fB231
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGAAGCCTGGAAGAGCA
R:
GTTCCTGAGGGTCTCCACCAT
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development