MmuEX0053054 @ mm9
Exon Skipping
Gene
ENSMUSG00000067942 | Zfp160
Description
zinc finger protein 160 [Source:MGI Symbol;Acc:MGI:108187]
Coordinates
chr17:21148640-21157162:+
Coord C1 exon
chr17:21148640-21148736
Coord A exon
chr17:21155793-21155853
Coord C2 exon
chr17:21157036-21157162
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTTTTTCTTAAAGCCT
3' ss Score
7.39
5' ss Seq
AGGGTGTGT
5' ss Score
4.51
Exon sequences
Seq C1 exon
GATTGACTTCTAAACATTAATGTTGCACAAGGAAGAACCTGGGAGAAGGAGAAGAAAGAGGAAATAAAAAAAAAAGCCAGGGATGGCTGTCACTCAG
Seq A exon
CCTCATGACTTTATCTCTGAAGACACTGCCCATGGAATAGCTCAGCTAGAAACTGAACAGG
Seq C2 exon
GGACAGTTGTCATTCAGTGATGTAGCCATAGAGTTCTCTCAAGAGGAATGGGAATGCCTAGACCATGCACAGAGAGCTTTGCACAGGGATGTCATGTTGGAGAATTACAGCAACCTGCTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067942_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.810 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAACCTGGGAGAAGGAGA
R:
TCTCTGTGCATGGTCTAGGCA
Band lengths:
142-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: