BtaEX0001444 @ bosTau6
Exon Skipping
Description
Quinone oxidoreductase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A6QQF5]
Coordinates
chr16:60853455-60859871:-
Coord C1 exon
chr16:60859762-60859871
Coord A exon
chr16:60858282-60858363
Coord C2 exon
chr16:60853455-60853636
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACTCCTCTTTCCCTGCACAGAGA
3' ss Score
9.95
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
AACCTGTGGCAGATTCCAGAAAAAGTGTCCCTCCGAGAAGCTGCTGCTCTGCCCGTGTCGTATGGCACTGCTATTTTCGCCCTGGAGCATCGGGCCTGTACCCAGCCTGG
Seq A exon
AGAAACTGTTTTAGTGACGGCAGCAGCTGGAGCCACAGGCCTCGCCGTGATAGATGTGGCAACAAACATTCTTCAGGCCAAG
Seq C2 exon
GTAATAGCTGCAGCTGGAAGTGATGAAAAGTGTCAGCTGGCGATGCAGAGTGGGGCACAGTCCAGCGTGAACTACAGTCGGGGCAGCCTTAAGGAGGCTGTGGGGAAGCTGGTGGGCAGTGGCGGGGTGAACGTGGTCATTGACATGGTGGGAGGAGACATCTTCCTGGAGGCTCTCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046172_MULTIEX1-4/7=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(30.0=100)
A:
PF082407=ADH_N=PD(5.0=21.4),PF0010721=ADH_zinc_N=PU(12.1=57.1)
C2:
PF0010721=ADH_zinc_N=FE(45.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGTCCCTCCGAGAAGCT
R:
CGACTGTAGTTCACGCTGGAC
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development