Special

MmuEX0007409 @ mm9

Exon Skipping

Gene
ENSMUSG00000033488 | BC026585
Description
cDNA sequence BC026585 [Source:MGI Symbol;Acc:MGI:2448516]
Coordinates
chr1:159395843-159419191:+
Coord C1 exon
chr1:159395843-159395952
Coord A exon
chr1:159397297-159397378
Coord C2 exon
chr1:159418574-159419191
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTTCCTTGGCACAGAGA
3' ss Score
6.72
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ACCCTGTGGCGGATTCCAGAAAATGTCTCTTTGCAAGATGCTGCAGTGTTACCGGTATCTTATGGCACAGCTATTTTGGCTGTAGATCATCGGGCCCGCATCCAGCCCGG
Seq A exon
AGAAACTGTTTTAGTGACAGCAGCTGCTGGAGCCACAGGCCTCGCAGTGATAGACGTGGCGACAAATGTGTTCCGCGCCAAG
Seq C2 exon
ATCAACGATGCCTTCCTTCATGTGATGCAGCGCAAATCCACGGGCAAGGTGCTCTTGTCCCTCAAGTAAACCCTACCCTGGGCAGACTCCCAAGTCTGCTGTCCCTCCTGCATTTTAAAGGGCTCATCCTTAGTGACCCAGGTGCCGTGTCTTGGTGTCAGTTCTCCTTGCTTCTGCTTTCTTGCTGCCTGTAATCATTGTGGCCACAGACATTCCTGCCTAAACTTAACCCCTTCTGTGAGCAAAAGGTACTGTGAGTTCCTTGAGAAATAGGTACTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTACCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTGTAAGGCATTTTCTTAATTAGTGATCAAGGGGGAAAGGTCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGTTCTATAAGAGAGCAAGCTGAGTAAGCCAGGGGAAGCAAGCCAGTAAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033488_MULTIEX2-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.018 A=0.000 C2=0.033
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF082407=ADH_N=PD(28.4=83.8)

							
A:
PF082407=ADH_N=PD(7.3=32.1),PF0010721=ADH_zinc_N=PU(11.9=57.1)

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000044945





     
                   









    
Main Skipping Isoform:
ENSMUSP00000113664





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000044945f3144A
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:177999743-177999817 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr16:60858282-60858363 
HIGH PSI
BtaEX0001444
([1])
Chicken
(galGal4)
chr8:6588618-6588801 
ALTERNATIVE
GgaEX0028953
([2])
Chicken
(galGal3)
chr8:6917067-6917128 
ALTERNATIVE
GgaEX0028953
([3])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TTTGGCTGTAGATCATCGGGC

				
R: 
GGGTCACTAAGGATGAGCCCT

				
Band lengths: 
175-257

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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