MmuEX0007411 @ mm9
Exon Skipping
Gene
ENSMUSG00000033488 | BC026585
Description
cDNA sequence BC026585 [Source:MGI Symbol;Acc:MGI:2448516]
Coordinates
chr1:159400747-159419191:+
Coord C1 exon
chr1:159400747-159400928
Coord A exon
chr1:159402319-159402547
Coord C2 exon
chr1:159418574-159419191
Length
229 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTCCTTGCCGTCAGCCT
3' ss Score
5.29
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCATAGCTGCCACTGGAAGTGACGAGAAGTGCAAGCTGGCGGTGCAGAGGGGAGCACAGTTCAGTGTGAACTACAGCCAGGGCAGCCTGAGGGATGCAGTGAAGAAGCTGGCAGGCAGCGGTGGGGTCAACGTAGCCATTGACATGGTGGGAGGAGATGTCTTCCTGGAGTCTCTCCGCAG
Seq A exon
CCTGGCGTGGGAGGGCAGGATCGTGGTGTTGGGATTCGCTGGAGGAAACATTGCGTCCGTGCCCAGCAACCTGTTGCTCCTGAAGAACATCTCGGCCATGGGACTGTACTGGGGTCGCTACCAACACCAGGACTTTGCAGTGTTTTCCAAGAGCATGTCCACAGCCATGCAGTACTGCCAGCAAGGGCTCATCCACCCCCACACGGGTGCCGTGTTTAAGCTGGAGAAG
Seq C2 exon
ATCAACGATGCCTTCCTTCATGTGATGCAGCGCAAATCCACGGGCAAGGTGCTCTTGTCCCTCAAGTAAACCCTACCCTGGGCAGACTCCCAAGTCTGCTGTCCCTCCTGCATTTTAAAGGGCTCATCCTTAGTGACCCAGGTGCCGTGTCTTGGTGTCAGTTCTCCTTGCTTCTGCTTTCTTGCTGCCTGTAATCATTGTGGCCACAGACATTCCTGCCTAAACTTAACCCCTTCTGTGAGCAAAAGGTACTGTGAGTTCCTTGAGAAATAGGTACTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTACCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTGTAAGGCATTTTCTTAATTAGTGATCAAGGGGGAAAGGTCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGTTCTATAAGAGAGCAAGCTGAGTAAGCCAGGGGAAGCAAGCCAGTAAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033488_MULTIEX2-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(44.4=100)
A:
PF0010721=ADH_zinc_N=PD(42.2=74.0)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACGAGAAGTGCAAGCTG
R:
GGGTCACTAAGGATGAGCCCT
Band lengths:
303-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: