HsaEX0056850 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr1:177967683-178034801:-
Coord C1 exon
chr1:178034705-178034801
Coord A exon
chr1:178022440-178022668
Coord C2 exon
chr1:177967683-177968039
Length
229 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCTCTTTCTCCTCAGCCT
3' ss Score
9.84
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCAGAGTTGATGTCCATTTCTGTGGAGTTAACTTTGGTGATATTTTGATCTGCCGTGATCAATATCAGGAAAGGCCCCATCTTCCCTTCACACCTG
Seq A exon
CCTGGCATGGGAGGGCAGGATTGTGGTGGTGGGATTTGCTGGAGGAAACATTGCTTCTGAACCAGCCAACCTTCTGCTCCTGAAGAATATCTCTGCTATGGGCCTGTACTGTGGTCAATACAAAGATATGAACTTTCCCGTCTTCTCCAAGAGCCTATCTTCAGTGCTTCAGTACTGCCAGCAAGGGTGCATCCAGCTATATGTCAGAATGGTTTTCAAGCTGGACGAG
Seq C2 exon
GAAGATAAAATAACTGCACAACTTACTCAAAACCCAGGACAAATTCAGAGAGTCAAGGATGGAACTTTGGGCTCCCCAGAGGCTGCCCCAGACACGAGGGAAGGCCACAGCACCCTCAAAGGATCCAGACCGAGGGTTTCGGAGAGATGGACATCATCGGCCTGTCCCTCACTCTTGGCACAATGGAGAGAGGTTTCACCAATGGCAAGACAACCGTGGGAGCCCCCAGCCACAGCAGGAGCCCAGGGCAGACCATCAGCAGCAGCCCCATTATGCATCCAGGCCAGGGGACTGGCATCAGCCTGTGTCTGGAGTTGACTATTACGAAGGTGGTTATCGCAATCAGTTGTATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254154-'6-26,'6-10,11-26
Average complexity
C3
Mappability confidence:
0%=0=0%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGCCCCATCTTCCCTTC
R:
ATAATGGGGCTGCTGCTGATG
Band lengths:
302-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development