GgaEX1000889 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:6917586-6919458:+
Coord C1 exon
chr8:6917586-6917767
Coord A exon
chr8:6918235-6918463
Coord C2 exon
chr8:6919236-6919458
Length
229 bp
Sequences
Splice sites
3' ss Seq
TGTCACTTGTCTTCTTGCAGTTT
3' ss Score
10.05
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTGATAGCAGCAGCCGGCAGCGATCCCAAGTGCCAGCTGGTCCTGGCAAATGGGGCAAGCCATGCAGTGAACTACAGCCAGAACAGTCTCAGGGAGCAGGTGACAGCACTCACAGGTGGCAGAGGGGTCGACGTGGCCATTGAAGCTGTTGGTGGGGACATCTTCAAGGCTGTCCTGCAGAG
Seq A exon
TTTGGCTTGGGAGGGCAGGATTGTGGTGATGGGTTTTGCCGGAGGGAAAATCCCCTCAATTCCTGCCAACCTGCTGCTCCTGAAGAACGTGTCAGCCATGGGAGTGTACTGGAGTCGGTACCAGCAGGAGGACTTCCCTCTTTTCTCCTCTGCCATGTCCTCCCTTCTTCAGTATGGCCGGGAGGGAAAGATCCATCCGCACATTGGAGCAGTCTTCAAGCTGGAAGAG
Seq C2 exon
GTGAATGAAGCCTTCAACCACGTGCTTCAGCGCAAGTCCACTGGAAAGGTCATCATCTCCATGAAGTAAAAGGGTTGTGGGGGATTTCTTGCATATGGTAAACTGGAGGACCCTCAGCCGACTTTGTGCACGTCCTGCATCATCACATGGCTATAGGAGCAGTAATTTTCACAAGGCTGTCTGGCCTTCTAAAATCATCAATAAAGTTTCATAGCACTCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(45.8=100)
A:
PF0010721=ADH_zinc_N=PD(40.5=68.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAACAGTCTCAGGGAG
R:
GCCAGACAGCCTTGTGAAAAT
Band lengths:
292-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]