GgaEX1000889 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NVJ2]
Coordinates
chr8:6589157-6591317:+
Coord C1 exon
chr8:6589157-6589338
Coord A exon
chr8:6589806-6590034
Coord C2 exon
chr8:6590807-6591317
Length
229 bp
Sequences
Splice sites
3' ss Seq
TGTCACTTGTCTTCTTGCAGTTT
3' ss Score
10.05
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTGATAGCAGCAGCCGGCAGCGATCCCAAGTGCCAGCTGGTCCTGGCAAATGGGGCAAGCCATGCAGTGAACTACAGCCAGAACAGTCTCAGGGAGCAGGTGACAGCACTCACAGGTGGCAGAGGGGTCGACGTGGCCATTGAAGCTGTTGGTGGGGACATCTTCAAGGCTGTCCTGCAGAG
Seq A exon
TTTGGCTTGGGAGGGCAGGATTGTGGTGATGGGTTTTGCCGGAGGGAAAATCCCCTCAATTCCTGCCAACCTGCTGCTCCTGAAGAACGTGTCAGCCATGGGAGTGTACTGGAGTCGGTACCAGCAGGAGGACTTCCCTCTTTTCTCCTCTGCCATGTCCTCCCTTCTTCAGTATGGCCGGGAGGGAAAGATCCATCCGCACATTGGAGCAGTCTTCAAGCTGGAAGAG
Seq C2 exon
GTGAATGAAGCCTTCAACCACGTGCTTCAGCGCAAGTCCACTGGAAAGGTCATCATCTCCATGAAGTAAAAGGGTTGTGGGGGATTTCTTGCATATGGTAAACTGGAGGACCCTCAGCCGACTTTGTGCACGTCCTGCATCATCACATGGCTATAGGAGCAGTAATTTTCACAAGGCTGTCTGGCCTTCTAAAATCATCAATAAAGTTTCATAGCACTCCACATCTGACCCAGCAGCATTTCGGGGGGCAAAGAGTCACAGGGCTGGCCTGGATGTAAGCTGGATTCTTGCACAGCCTATCCAGCAGTAGGCTGTGAGCTGCTTCTCCCCTGCTGGGAACAGCTGAACTTCCTACATTGGCTGCAGGAGGAGAGGAAAGCAGCTCAGCTTCAGCTTCCCCCCCACCTCTTTAATACAGTTTGAGCTGGACAAAGAGCAAGATAACTAACTTGGGTCCCGATGATGCTCATTTGGGAGCCATTGGGGTAGGCAGTGGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341_MULTIEX1-7/7=6-C2
Average complexity
S*
Mappability confidence:
90%=90=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(45.8=100)
A:
PF0010721=ADH_zinc_N=PD(40.5=68.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCATTGAAGCTGTTGGTG
R:
CGAAATGCTGCTGGGTCAGAT
Band lengths:
292-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]