BtaEX0001441 @ bosTau6
Exon Skipping
Description
Quinone oxidoreductase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A6QQF5]
Coordinates
chr16:60833854-60853636:-
Coord C1 exon
chr16:60853455-60853636
Coord A exon
chr16:60851233-60851461
Coord C2 exon
chr16:60833854-60835584
Length
229 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCCTTTTCCCCTCAGCCT
3' ss Score
10.11
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTAATAGCTGCAGCTGGAAGTGATGAAAAGTGTCAGCTGGCGATGCAGAGTGGGGCACAGTCCAGCGTGAACTACAGTCGGGGCAGCCTTAAGGAGGCTGTGGGGAAGCTGGTGGGCAGTGGCGGGGTGAACGTGGTCATTGACATGGTGGGAGGAGACATCTTCCTGGAGGCTCTCCGCAG
Seq A exon
CCTGGCGTATGAGGGCAGGATCGTAGTGGTAGGTTTCGCTGGAGGAACCATTGCTTCTGTACCAGCCAATCTGCTGCTGCTGAAGAATGTTAGTGCCATGGGGCTGTACTGGGGCAGATACCGGCAGCAGAACTTTCCCGTCTTCTCCAGAAGCCTGTCCTCAGCACTTCAGTACTGCCAAGAAGGGCGCATCCAGCCACACATTGGAGAGGTTTTTGAACTGGAAGAG
Seq C2 exon
GTCAATGATGCCTTCCTTCATGTCACACAGCGTAAATCCACAGGCAAGGTGCTTCTCTCCCTTAAATAAATTTTCACTTCAGCAAACTCAGCATGTCTAAACCCAAACTCATCATCTTTCCAAAGAAACCTGATTTCCCATCCATGTTTTTTTTCCCATATTACCACCTTCCTTATTAATCCAGTTTCAAGATCTTTTAGAGTCATCTTTTATTCTGTTTTCTTATTCCTAGATAGTGTGATCATGTACTTTATTGTCCAGACTTGGACACAGTTGAGAGTGAAAGGATGCTGTTAGTAATTACACCAGGAGAACAGGTGTCCCAAGATGTATGATCACCTATTCATAACGCATCCATGGCCAAGTTCTGTCATCTCCACCTCTAAGAAGTCTTACACACCACATCCTGTTTTCCATTCTGACTAATCATGTCATATCTGCTAATTCCAGTGACCTCCTAACTTTCCTACCTTTAATCTACCCCCTCCCTCTCCATTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046172-'9-13,'9-9,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(45.5=100)
A:
PF0010721=ADH_zinc_N=PD(40.9=70.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACATCTTCCTGGAGGCT
R:
TCTCAACTGTGTCCAAGTCTGG
Band lengths:
308-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development