RnoEX0092919 @ rn6
Exon Skipping
Gene
ENSRNOG00000005177 | Tp53i3
Description
tumor protein p53 inducible protein 3 [Source:RGD Symbol;Acc:1304982]
Coordinates
chr13:75124183-75143441:+
Coord C1 exon
chr13:75124183-75124364
Coord A exon
chr13:75126606-75126834
Coord C2 exon
chr13:75142875-75143441
Length
229 bp
Sequences
Splice sites
3' ss Seq
TGTTTCCTCCTGGTCCTCAGCCT
3' ss Score
6.09
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCATAGCTGCAGCTGGGAGCGACGAGAAATGCAAGCTGGCGATGCAGAGGGGAGCACAGTCCGGCGTGAACTACAGCCAGGGCAGCCTGAAGGATGCAGTGAAGAAGCTGGTGGGCAGCAGTGGGGTGAATGTGGCCATTGACATGGTGGGAGGAGATGTCTTCCTGGACTCTCTCCGCAG
Seq A exon
CCTGGCGTGGGAGGGCAGGATTGTGGTGTTGGGATTCGCCGGAGGAAACATCGCATCCGTGCCCAGCAACCTGTTGCTCCTGAAGAACATCTCTGCCATGGGCCTGTACTGGGGTCGCTACCAACACCAGGACTTTGCAGTGTTTTCCAAGAGCATGTCCACAGCCCTGCAGTACTGCCAGCAAGGGCTCATCCACCCACACACTGGTGCTGTCTTCAAGCTGGAGAAG
Seq C2 exon
GTCAATGATGCCTTCCTTCATGTGATGCAGCGCAAATCCACGGGCAAGGTGCTCCTGTCCCTCAAGTAAATCCTGACCTGGGTAGATTCCCAAGTCTGATCTCCCTCACCAGTTTTAAAGGGCTCATCCTTAGTGACCCAAGTGCCACGTCTTGGTGTCAGTTCCCTTTGCTTCCGCTTTCTTGGTGCCCATAATCAGTGTGACCACAGAGGTTCTTGCCTAAACTCAACCCTATCTGTGAGCAAAAGGTACTGTGAGTTCCTTGAGAAGTAGGTACTGTGTCTGGATCACCTGCTGACTTCCTATACCTTCTGCTATTCAATTTAATTTATCTGGAATCTTAAATTGTGGGATTAAATGAAGAACATGTTGCCCTGGAAACAACCCCAATGCCCTTTGACGGGTGAATATATAAATATGCACACTTTGCATAGGTATTGTATAATGTGCATACATCAGAATATTTTTAGCCTTAAAGAGGAACATCATTCACAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005177-'16-18,'16-15,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PD(24.3=63.0),PF0010721=ADH_zinc_N=FE(74.6=100)
A:
PF0010721=ADH_zinc_N=PD(41.8=72.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAATGCAAGCTGGCGATG
R:
GGGTCACTAAGGATGAGCCCT
Band lengths:
297-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]