MmuEX0007411 @ mm10
Exon Skipping
Gene
ENSMUSG00000033488 | BC026585
Description
cDNA sequence BC026585 [Source:MGI Symbol;Acc:MGI:2448516]
Coordinates
chr1:157470616-157489060:+
Coord C1 exon
chr1:157470616-157470797
Coord A exon
chr1:157472188-157472416
Coord C2 exon
chr1:157488443-157489060
Length
229 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTCCTTGCCGTCAGCCT
3' ss Score
5.29
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCATAGCTGCCACTGGAAGTGACGAGAAGTGCAAGCTGGCGGTGCAGAGGGGAGCACAGTTCAGTGTGAACTACAGCCAGGGCAGCCTGAGGGATGCAGTGAAGAAGCTGGCAGGCAGCGGTGGGGTCAACGTAGCCATTGACATGGTGGGAGGAGATGTCTTCCTGGAGTCTCTCCGCAG
Seq A exon
CCTGGCGTGGGAGGGCAGGATCGTGGTGTTGGGATTCGCTGGAGGAAACATTGCGTCCGTGCCCAGCAACCTGTTGCTCCTGAAGAACATCTCGGCCATGGGACTGTACTGGGGTCGCTACCAACACCAGGACTTTGCAGTGTTTTCCAAGAGCATGTCCACAGCCATGCAGTACTGCCAGCAAGGGCTCATCCACCCCCACACGGGTGCCGTGTTTAAGCTGGAGAAG
Seq C2 exon
ATCAACGATGCCTTCCTTCATGTGATGCAGCGCAAATCCACGGGCAAGGTGCTCTTGTCCCTCAAGTAAACCCTACCCTGGGCAGACTCCCAAGTCTGCTGTCCCTCCTGCATTTTAAAGGGCTCATCCTTAGTGACCCAGGTGCCGTGTCTTGGTGTCAGTTCTCCTTGCTTCTGCTTTCTTGCTGCCTGTAATCATTGTGGCCACAGACATTCCTGCCTAAACTTAACCCCTTCTGTGAGCAAAAGGTACTGTGAGTTCCTTGAGAAATAGGTACTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTACCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTGTAAGGCATTTTCTTAATTAGTGATCAAGGGGGAAAGGTCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGTTCTATAAGAGAGCAAGCTGAGTAAGCCAGGGGAAGCAAGCCAGTAAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033488_MULTIEX1-3/4=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=PD(57.5=92.0)
A:
PF0010721=ADH_zinc_N=PD(42.2=74.0)
C2:
PF136021=ADH_zinc_N_2=PD(28.4=79.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACGAGAAGTGCAAGCTG
R:
GGGTCACTAAGGATGAGCCCT
Band lengths:
303-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types