BtaEX0001497 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MWP3]
Coordinates
chr18:60127911-60130949:-
Coord C1 exon
chr18:60130906-60130949
Coord A exon
chr18:60128085-60128292
Coord C2 exon
chr18:60127911-60128000
Length
208 bp
Sequences
Splice sites
3' ss Seq
GGGAGTTCTGCTCTGCATAGGGA
3' ss Score
3.91
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
CTCCTCCTCCGGGTTGAGCATGGGAGTTTTCTTGTTCCTACAAG
Seq A exon
GGATGGACCAAGGCCTGGTGTGTGACCTGAAGGGGATTTTGGGGTCAGCGGAGGTGCCTACTGCTGCTGTATGCATGAGGCCTCACCAGGAGGGGAGCGAGATCTTACGGAAAGTGTGGGGAAAAACACTGTGTTGGACTGTGTGTGGGTGTTGACTGTCGTGAGTCCCTCCTGTCACAGTGGGCAGCCGAGGACTCTGTTCCACATG
Seq C2 exon
ATTGACCTCTAAAGTCTCATGTTGCCTGAGGAAGACACACAGAAGATGAGGAAGAGGAAAGAAAAGGAGTCAGGCATGGCTCTTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047053-'2-2,'2-1,3-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.750
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCGGGTTGAGCAT
R:
CTGAGAAAGAGCCATGCCTGA
Band lengths:
132-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development