BtaINT0009570 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MWP3]
Coordinates
chr18:60127911-60131456:-
Coord C1 exon
chr18:60131311-60131456
Coord A exon
chr18:60128001-60131310
Coord C2 exon
chr18:60127911-60128000
Length
3310 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
GCATGTTTGTAACTTTTAAGATT
3' ss Score
5.37
Exon sequences
Seq C1 exon
GAAGTGGAGGGCGAGGAGTGAAGGTTGTACAAGGAAGGGTGAATGTCTCCTTTCTAGTGAACCGCTCTGCGAGGCCTGTCTTACTTCCTCCTTAGGGTCTTGTGAGTGACTGCGGATCTAAACTCCCCACTGCCGTCCCAACCCGG
Seq A exon
GTAAGTTCAGACCTAGCGGGACTGGTCGCGGATTCTTTCTCTCTCTCTTGATCATTTCTCTTTCGGTTTGTGAATTTCTCTGAAGCCAGTCACTGTGACACTGTTCGATCCCATTTCTGGGCTCCAAAGAGCTCCGGTATCACATTCTTTTATGTCTCAGCGCAGAAAAAAAAAAATTAGCTAGAGACAAAGAGATAGGAAGAAGTGATTTATTAGACGAGGATGCTTGTGAGGCTTACAAGGGCGCGGGAGAGGGGATGCCCCCCTGAGAATTTACTGGGCTACAGTTTTATAATCGAAAGATGAGGCGGAGAAGACCTTCCTTGTCTTTTCTGAATAGACATCATGCTTCCATCATCAGCTCCTCCTCCGGGTTGAGCATGGGAGTTTTCTTGTTCCTACAAGGTAAAGCCAGATCCACAAATTACTGCTTTTTATGTGTGCACAGAGCATGTCCTAACTTATTGAGCTCACTGGGCAGGATGTGAGTTTCGTGCCACCATTGTTTTACTGTTTGTTGGCATGTGTTGTGCTTCTATTGCATGATTTCATTGCTAAGCAAGCCTGGTTGGTTTTGTGGTTAAGCGAACCTGCTTTCTTGTGTAATCATTAACTTATAGGAGCCTCCCATATTTCTTCTATTGACAGTCCTCTAGTGGGATTAACTGTTTAATCATCTACTTTGTACCTTTACTCTGTCCCTGTCAGCTGCCCTTGGCTTTTTTGCCTACCCAACATTTTCCTGCTTAAAACCTTCTACTGTTTCCCACCTCCCTTGTAAAGTACTTGTCTGCAGGGGTGGGTTCCTGCCCCTCGCCCAGCCTTGCCCTCTCAGCCCCTCTTATTAGTTGCCGTATTTCTAAATATAGGGATGAAGGGAGGATCAGGAGAAGCAGAGACAGAGGGACTGAGAAAGGAATAGAAAAACTGAGCTGGAGAAAAGAATGAGGAATACCAGATGGAGCATAGAGGATGGCTGAGGGACATGCAAAGGGATTTTTAAAAAATGAAATAGATTTAGCCTTGAAAGTAGCAGGTGAATAAAATAAGAGAAGTAAGTTAACAAGCCGCTCTCCAGATGGGAAACGTGGGGAGAGGCTGCCGGATCAGCCATAGGACAGGGGGCATGAGTGGTGCTGCCCTTTGCACAGAGTCCCACAGTGGTTAGAAAAGGTGGAAACTTGGCCTTCAGAGCAACTTACTGCTGGGAGGGAATGAGGACAGAGGGTGACAAGAAGAGCAGACGTAGAGAGAGAGCAGGAAAGAAGCATCGCCAGCTAAGGTGCCAGGGAGTGAAGAGGAAGGAAATTTAACTGCAATAGATGAGGTGTAACCCAGAGGGTAGAGGGGGAGCAGAGGTGGGGGAAGAAGGAGGGTCAAGAAGGGAAGCAAGTTGCAAAGTGGAGCAGGACAGGTGTAAGGGAAGTAGAGAAGAGGGGAGAAATAGCAGGAGAGCCGAGTGAAGCAAAATGAGGGGACGGAGAAAGAAGAATCTCAGGGACGGGGAAGCCTGGTGGGCTGCTGTCTGTGGGGTCACACAGAGTCAGACACAACTGAAGTGACTTAGCAGCAGTAGCAGATAAAGGGAATGAAATGGTAACACATGATAGTGCAGGTAGAGGGGGAAACTGGATCCAGATAGATGGTAAACTGTTTGGATATGGATGATTAAGTTAGGATATATTGATGTGTGACTTTTGTTGTTGTTCAGTTGCTCAGTCTTGTCTGACTCTTTGCGACCCCATGGACTGCAGCACACCAGGCTGCCCCGTCCTTTGCCATCTCCTGGAGCTTGCTCAAACTCATGTCCGTTGAGTCAGTGATGCCATCCAACCCTTTCATCCTCTGTCGTCCCCTTCTCCTCCTACCTTCAATCTTTCACAGCATCATGGCCAAGACCTTGATGTGACTTTGGAATTTAGTAAATTTAAAATTTGTTTAAATTATACAAATGAGGATGAGAATTGCAAAACTCCTGTCTATAAAGTTTGTGCCATTTTGTACTTATTTATATGAGAAGATGACTTCCATTTGCAGTCCTTATTCAGCCAGGGTCTTGATTCACTTAATTGTGGGTCACCCCTGGGGTAGGGGACTGGGGAGAGGACACTGGGGTAAGAAATGACTGATTTCACTACATAGTGCCTTTTTAGTGGAACATTTATTTAAAGTATTCTTTTTTTTATAATGGAGTTACTTTTTCTTTTTTGACTATTAAATTTTTTTTCAAATTTATTTTTGGCTTGCTGAACTTTATTTATTTAAAATTTATTTATTTTTTCCTTGCTGTGCACAGGCATTCTCTAGTTGTGGTGAGGGTGCTACTCTCTAGTTGCAGTGCCTGGGCTTCTGATTGTAGAGGTTTCTCTTGTTGCCCAGCACAGGTTCTAGGCGTGTGGACTCAGTAGTTGTGGTGCGCGGGCTTAGTTGCCCCTTGGGATGTGGAGTCCTCCTAGACTAGGGATCAGACCCCTGTCCTCTGCATTGGAAGTGGATTCTTTACCAGTGGACCACCAGGGAAGTCCTTGATTCTTTTTTCTTTTTTTTTAAATAAATAAGTAAATGTCCCACTGGGACATGTACATTGTTGGAGACATCTCGCTTTCAGTAGTCATTTTTGGAGATGACAGTGTTTGTTTTGGGTCACTGGATGTGAAAGTAGTGTGACTTGGAATCTAGTGGGCCCTTGGGTGTCTTCTCATGTATTTTTCTCTCAGGCATCAGTTATTAGGGCTTGGAATGTTTTCTGTTATTGTATTGCTTGTAAGTTTGTTTGCACCAGAAGGAAATTTATGAATGCTAAGATTAAGATTACAGGCTTTTTTTTTTGAAATTAAATAATCACTCTTTATTCAAAATAAATAAGCCCTCTTACTTACAGGAAAATATGAAAGTAAACTTCTATCCTTCTGGCGTCTAAAAAACCACATTCAAGATTTTAGAATGTTTTCAGTAGGGGATATGTCCTGTTACATATGGGTCTGTGGACTGAAGCTGAGGGAGTTCTGCTCTGCATAGGGATGGACCAAGGCCTGGTGTGTGACCTGAAGGGGATTTTGGGGTCAGCGGAGGTGCCTACTGCTGCTGTATGCATGAGGCCTCACCAGGAGGGGAGCGAGATCTTACGGAAAGTGTGGGGAAAAACACTGTGTTGGACTGTGTGTGGGTGTTGACTGTCGTGAGTCCCTCCTGTCACAGTGGGCAGCCGAGGACTCTGTTCCACATGGTAAGCTTTCTCCTCTGTGGTTGTGACACAGAGAGGGGGGAATGTTCATTCTAAGCCTTAAACAGCATGTTTGTAACTTTTAAG
Seq C2 exon
ATTGACCTCTAAAGTCTCATGTTGCCTGAGGAAGACACACAGAAGATGAGGAAGAGGAAAGAAAAGGAGTCAGGCATGGCTCTTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047053:ENSBTAT00000063211:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.750
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development