BtaEX0001606 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101518325-101521417:-
Coord C1 exon
chr5:101521189-101521417
Coord A exon
chr5:101520519-101520645
Coord C2 exon
chr5:101518325-101518446
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTTCAAATATCCTCTTTAGGTT
3' ss Score
9.39
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CTACTCGGGAGAGGAGTCTGTCCACATCACGGTTCCTGACACCATCACCACGTGGAAGGCCATGACTTTCTGCACCTCCCAGTCCAAGGGTTTTGGCCTCTCACCCACCGTTGGAGTGACTGCCTTCAAGCCGTTCTTTGTTGATCTGACGCTCCCTTACTCAGTGGTTCGTGGTGAATCCTTCCGTCTGACTGCCACCATCTTCAATTACCTGAAGAAGTGCATCAGG
Seq A exon
GTTCAGACTAACCTAGCTAAGTCAGAGGAGTACCGAGTGGAAACGCAGACAGCCACTCGGGCCTCCACCTGTCTGTGTGCTGACGAAGCAAAATCCTATCACTGGAACATCACGGCTGTCAAACTGG
Seq C2 exon
GTCATGTAAACTTCACTATCAGCACAAAGATTCTGAACAGCAATGAACTCTGTGGGGGCCAGAAGGCGTTTGTTCCCCTAAAGGGTGGGAGTGACACACTCATCAAACCAGTTCTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.5=100)
A:
PF0020717=A2M=PD(4.4=9.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCTGACACCATCACCAC
R:
CCCCCACAGAGTTCATTGCTG
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development