GgaEX6027217 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NK40]
Coordinates
chr27:1689252-1690030:+
Coord C1 exon
chr27:1689252-1689477
Coord A exon
chr27:1689553-1689679
Coord C2 exon
chr27:1689909-1690030
Length
127 bp
Sequences
Splice sites
3' ss Seq
GATGTTGCTGGGGTCTGCAGGTC
3' ss Score
6.19
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
AGAGGAGGGTTCTGCAGAAATGGTGGTGACGGTGCCCGATGCCATCACAGAATGGAAAGCTGAGATGTTCTGCACAGCACCCGTGGGCTTGGGGCTAGCCCCTGCCACCACCCTCACAGTCTTCAAGCCCTTCTTCGTGGACCTGGCGCTGCCCTATGCTGTGATCCGTGGTGAAGCCTTCTCTCTTGTTGCCACCGTCTTCAATTATCTGCGGCAGTGCCTACGG
Seq A exon
GTCCGGGTGACACTGGCGGACTCGGCAGAGCTGGAGGTGTCAGAGGTTGCAGGTGCGATTTACAGCATCTGCGTCTGTGCGGATGAAGCCAAGACGTTCCGGTGGGATGTGAAGGCTACCAACCTGG
Seq C2 exon
GAGAGGTGAACATCACCATCAGCACCGAGGCCATAAGCTCTGAGGAGCTCTGTGGCAATGAGAAGCCTGTGGTGCCAGCCCAGGGGCGTGTAGACACTGTGATAAAGCCATTGCTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293-'19-23,'19-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.3=100)
A:
PF0020717=A2M=PD(4.4=9.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAGAAATGGTGGTGACG
R:
CGGTGCTGATGGTGATGTTCA
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]