BtaEX0002253 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006447 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr25:18606645-18635317:+
Coord C1 exon
chr25:18606645-18606855
Coord A exon
chr25:18627940-18628147
Coord C2 exon
chr25:18635174-18635317
Length
208 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTCTTCTCTTTTAGGGA
3' ss Score
12.6
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GCTGGGAAGAAACCTTCCAATCCAGCCTTCTGGTGGACAAATGGAAATGGAGAAGAAGTGAGATGGAGTTTTGAGGAACTAGGATCTTTATCAAGGAAATTTGCAAATATACTTACAGAAGCCTGTGGCCTGCAAAGGGGAGATCGAGTAATTTTGCTTTTGCCCAGGATCCCTGAATGGTGGCTTGCAAATATAGCCTGTCTGCGCACAG
Seq A exon
GGACAGTTCTAATTCCAGGAACCACTCAGATGACCCAAAAAGACATCCTCTACCGACTACAATCTTCAAAAGCAAAGTGCATTATTACCAATGAAGTTTTAGCTCCAGCAGTTGATGCTGTTGCATCTAAATGTGAAAATCTGCACTCCAAACTAATTGTGTCTCAGAGCCCCAGAGAGGGTTGGGAGAACCTAAAGGAGATGATGAA
Seq C2 exon
ACATGCCAGTGACAACCACACCTGTGTGAAGACAAAACACAATGAGATGATGGCCATTTTCTTTACCAGTGGAACAAGTGGATATCCTAAAATGACTGGACACACCCACAGCAGTTTTGGTTTGGGATTATCTATAAATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006447_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.9=100)
A:
PF0050123=AMP-binding=FE(16.7=100)
C2:
PF0050123=AMP-binding=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTCTGGTGGACAAATGG
R:
AAAACTGCTGTGGGTGTGTCC
Band lengths:
306-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development