GgaEX6013247 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15628820-15630301:+
Coord C1 exon
chr14:15628820-15629030
Coord A exon
chr14:15629722-15629929
Coord C2 exon
chr14:15630158-15630301
Length
208 bp
Sequences
Splice sites
3' ss Seq
TTCCGCTTGCTCCTGCTTAGGAA
3' ss Score
7.67
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GAGGGAAAAAAGACTAAAAACCCCGCACTGTGGTGGGTAGATGGTGATGGAGAAGAGGTGAAGTGGAGCTTTGAAGAGCTGGGAGTGCTGTCCAGGAAAGCAGCCAATGTACTCTCTGGTGCCTGCAGTCTGCAGTGCGGGGACAGAGTTCTTCTGCTTCTGCCACGGATCCCAGAGTGGTGGCTGCTGAATGTGGCTTGCATGAGAACAG
Seq A exon
GAACCGTCCCGATTCCTGGCACACAGCAGCTGACAGCAAAGGACATTCTCTATCGCCTACAGAAATCCAAGGCAAAGGGCGTCATCACCAATGACTCTGTGGCATCAACTGTAGAGTCAGTAGAGGCTGACTGCCAGTCTCTGAAGTTCAAGTTGCTGGTGTCAGAGGGCCACCGAGAGGGGTGGCTGAGCTTCAAGGATCTCCTGAA
Seq C2 exon
AACTGCTCCATCTGATCACCGGTGTGTAACCACAAAGTCTCAACACCCCGTGGCCATCTATTTTACTAGTGGGACAACGGGAGCTCCAAAAATGACAGAACATTCCCACTGCAGCTATGGCATTGGCCTCACAGTGAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.8=100)
A:
PF0050123=AMP-binding=FE(16.6=100)
C2:
PF0050123=AMP-binding=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGGTGGGTAGATGGTGA
R:
AGCTGCAGTGGGAATGTTCTG
Band lengths:
301-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]