BtaEX0002317 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013555 | ACVR1B
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSQ2]
Coordinates
chr5:28044097-28048432:-
Coord C1 exon
chr5:28048202-28048432
Coord A exon
chr5:28045528-28045695
Coord C2 exon
chr5:28044097-28044253
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGTGGTCCTCCGCAGATA
3' ss Score
11.94
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTTACCCCTTTTTGTCCAGCGCACAGTGGCCCGGACCATCGTTCTACAGGAAATTATTGGCAAGGGCCGGTTTGGAGAAGTGTGGCGCGGCCGCTGGCGGGGCGGTGATGTGGCTGTGAAAATATTCTCTTCTCGGGAGGAACGGTCTTGGTTCCGGGAAGCAGAGATATACCAGACAGTCATGCTTCGCCATGAGAACATCCTCGGGTTCATCGCCGCTGACAATAAAG
Seq A exon
ATAACGGCACCTGGACACAGCTGTGGCTCGTGTCGGACTATCACGAGCACGGCTCCCTGTTTGACTATCTGAACCGGTACACGGTGACCATCGAGGGGATGATCAAGCTGGCCTTGTCTGCCGCCAGCGGGCTAGCACACCTGCACATGGAGATCGTGGGCACCCAAG
Seq C2 exon
GGAAACCTGGAATTGCTCATCGAGACTTAAAGTCAAAGAACATCCTGGTGAAGAAAAATGGCATGTGCGCCATCGCAGACCTGGGTTTGGCTGTCCGTCACGATGCGGTCACAGACACCATTGACATTGCCCCTAACCAGAGGGTGGGAACTAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013555_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
A:
PF0006920=Pkinase=FE(19.4=100)
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTTCTCGGGAGGAACGG
R:
AGTTCCCACCCTCTGGTTAGG
Band lengths:
258-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development