GgaEX6046890 @ galGal3
Exon Skipping
Gene
ENSGALG00000014631 | ACVR1B
Description
NA
Coordinates
chrE22C19W28_E50C23:8429-9794:-
Coord C1 exon
chrE22C19W28_E50C23:9564-9794
Coord A exon
chrE22C19W28_E50C23:9070-9237
Coord C2 exon
chrE22C19W28_E50C23:8429-8585
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACACCGCTTTCCTTCTGCAGACA
3' ss Score
10.8
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTTTGCCACTTTTTGTGCAGCGGACCGTGGCTCGGACGATCGTCCTGCAGGAGATCATTGGGAAGGGCCGCTTTGGGGAGGTGTGGCGCGGCCGATGGCGCGGAGGTGACGTGGCTGTGAAGATCTTCTCTTCCCGTGAGGAACGTTCCTGGTTCAGGGAAGCAGAAATCTACCAAACCGTTATGCTGCGACATGAGAACATCCTGGGCTTCATTGCTGCAGACAACAAAG
Seq A exon
ACAACGGGACGTGGACACAGCTGTGGCTCGTCTCCGATTACCACGAGCACGGATCTCTCTTTGACTACCTGAACCGCTACACGGTGACCATAGAGGGGATGATCAAGCTTGCTCTGTCTGCTGCCAGCGGGCTGGCCCACCTGCACATGGAGATCGTGGGTACTCAGG
Seq C2 exon
GAAAGCCTGGGATTGCTCACAGAGACCTGAAATCCAAGAACATCTTGGTGAAGAAGAATGGCACGTGTGCCATTGCTGACCTGGGGCTCGCTGTGCGCCACGACTCCGTCACGGACACCATTGACATCGCCCCGAACCAAAGGGTTGGAACCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014631-'6-6,'6-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
A:
PF0006920=Pkinase=FE(19.4=100)
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACGTGGCTGTGAAGATC
R:
ATGTCAATGGTGTCCGTGACG
Band lengths:
254-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]