BtaEX0003424 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15837748-15852823:-
Coord C1 exon
chr28:15852445-15852823
Coord A exon
chr28:15849933-15849964
Coord C2 exon
chr28:15837748-15837835
Length
32 bp
Sequences
Splice sites
3' ss Seq
GACACCATATTATTCAATAGGGT
3' ss Score
5.48
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CCCTGACCAGTGTAGAGATTCCATTACCTCCTATCTCAAAGGGGAGCCTGGAAAATTTGAAGCCAATGGAAGCCATGCAGAAGTCACTCCAGAAGCAAAGACAAAATCTTACTTTCCAGAATCCCAAAATGATGTAGGGAAACAGAGTGCAAAGGAAACCCTGAAACCAAAAATACAAGGATCTGGTCGTGTTGATGAACCAGCATCATCACTAGCAGCGTATCAGAAGGCTCTAGAAGAAACCAGCAAGTTTGTAATAGAAGAACCTAAACCCTGTGTGCCTGTCAGTATGAAAAAGATGAGTAGGACTTCTCCTGCAGATGGCAAGCCACGGCTTAACCTCCATGAAGAAGAGGGGTCCAATGGGTCTGAGCAGAAG
Seq A exon
GGTATTTTGTTCAGATGAAATTTCCTACAAAG
Seq C2 exon
GGAGAAGCTTATAAGATGAAGACGAAGAAAGAAATCCGTCAAGTGGAAAAGAAGAGCCATTCATAACAGTAAACGGTCAACCAACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052_MULTIEX1-2/5=C1-C2
Average complexity
ME(2-3[98=100])
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.940 A=1.000 C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
PF0053117=Death=PD(2.4=33.3)
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061228fB559
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGGGTCCAATGGGTCT
R:
ACGTTGGTTGACCGTTTACTGT
Band lengths:
117-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development