BtaEX0003531 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022922 | ANKRD26
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BDU5]
Coordinates
chr13:11325082-11329019:+
Coord C1 exon
chr13:11325082-11325219
Coord A exon
chr13:11326424-11326491
Coord C2 exon
chr13:11328986-11329019
Length
68 bp
Sequences
Splice sites
3' ss Seq
ATCACATTTTTAACACATAGCAT
3' ss Score
4.72
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AACCGCCCTCATACTTGCTGTCAATTATGAATGTACCGATGTAGTCAGTCTTCTCCTTCAGCGAGGTGCTGACGTCTTTTCTCCAGATGTCTTTGGATGGACTGCGGAAGAATATGCTGCTATTAGTGGTTTTGATAT
Seq A exon
CATTTGCGAACTGATCTCTGAATATAAAGAAAAGAGGCCTAAAACTACTCCCCAAAAAAGCAACCCAG
Seq C2 exon
CGGCTAAGAGTTCTGCAGAAGACTCTTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022922_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.917
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(55.4=100)
A:
PF127962=Ank_2=PD(20.5=70.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCTCATACTTGCTGTCAA
R:
TGCTTAAAGAGTCTTCTGCAGAACT
Band lengths:
168-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development