BtaEX0001318 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11223397-11341162:+
Coord C1 exon
chr13:11223397-11223609
Coord A exon
chr13:11223717-11223765
Coord C2 exon
chr13:11340984-11341162
Length
49 bp
Sequences
Splice sites
3' ss Seq
TACCCTCTGGGATTCTACAGGGG
3' ss Score
6.95
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ATTGTGTTAGCTTGTTGAAAATTTGGGATGCAATTCTTTTGTGTGAAAGATAAATGGAACTTTAAAAAAGCCACTGTGAACTACTCAGAGGAGAAATTAAAAAACTGGAAAATAAGGTTGGTGAGCTACAGAAAGAACTGTCTGAAAGAAAAGAAGTGAATCACAGTTAGGGCATCAGAAAGTGGAGTGGCAACGAGAGCTCGGTAGACTGAG
Seq A exon
GGGAGAATACGCCGTTAGTATTGTGGAGTGTGAAATTCATGGAAATAAT
Seq C2 exon
TTTGACCTTAAAGCAAGAAGAAGAGAATAGAAGAAATGCTGATATGTTATATGAAAAAATTAGGGAGCAATTAAGAAGAAAGGAAGACCAATATGGTAAAGAAGTTGAAATGAACAGCAACTAGAACTCACCCTCAGAGCTCTAGATGGAACTGAAGACTGAGAAATGATCTGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATCAGAAAGTGGAGTGG
R:
GTCTTCCTTTCTTCTTAATTGCTCCC
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development