BtaEX0003529 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022922 | ANKRD26
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BDU5]
Coordinates
chr13:11318233-11325219:+
Coord C1 exon
chr13:11318233-11318406
Coord A exon
chr13:11323476-11323582
Coord C2 exon
chr13:11325082-11325219
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTTCCTGTTTTACAGGAT
3' ss Score
10.89
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCCATAGAATGTCAAGAAGAGGAGTGTGCGACTCTTCTGCTGGAGCATGGTGCCAACCCAAATGTCACGGATGTCAATGGCAACACCGCTCTCCACTATGCTGTCTTTTGCCAGAACGTATCACTCGCGGCAAAGCTGCTTTCCTATGACGCCAATATAGAAGCCAAAAACGAG
Seq A exon
GATGACCTTACACCACTCTTACTTGGCATAAGTGAAAGGAAACAGCAAATGGTGGAATTTTTAGTAAAAAAAGAAGCAGATATACATGCGGTTGATAAGATGCAAAG
Seq C2 exon
AACCGCCCTCATACTTGCTGTCAATTATGAATGTACCGATGTAGTCAGTCTTCTCCTTCAGCGAGGTGCTGACGTCTTTTCTCCAGATGTCTTTGGATGGACTGCGGAAGAATATGCTGCTATTAGTGGTTTTGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022922_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.070 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(24.5=39.7),PF0002325=Ank=WD(100=56.9)
A:
NO
C2:
PF127962=Ank_2=FE(55.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAGAAGAGGAGTGTGCG
R:
AGAAAAGACGTCAGCACCTCG
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development