RnoEX0009606 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150606926-150612105:-
Coord C1 exon
chr4:150611932-150612105
Coord A exon
chr4:150609063-150609169
Coord C2 exon
chr4:150606926-150606987
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGCTTGTGATGTCTTGCAGGAT
3' ss Score
9.98
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
GCTGTACAGTGCCAGGAAGAAGAATGCGCAGCTATACTGCTGGACCACGGGGCTGATACGAACGTGACAGACAGCAGCGGCAACACTGCCCTCCACTACGCGGTCTACTGTGAGAGCACGTCCATAGCAGCCAAACTGCTCGCACGCGGCGCAAATATAGAAGCCAAAAACAAG
Seq A exon
GATGACCTAACGCCTATGTTACTGGCTGTAAAGGAAAATAAACAGCATATTGTGGAATTTCTAGTAAAGAAGAAAACAAGTATTCACGCAGCTGATCAGCTTGGAAG
Seq C2 exon
CAACAGGCAAATATTTGAATATGATGGGAAGAGACCAAAAAATTCTGAAAATAGCAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'6-4,'6-3,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.864
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(61.3=100)
A:
PF127962=Ank_2=PD(33.3=86.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTACAGTGCCAGGAAGAA
R:
TGGTCTCTTCCCATCATATTCAA
Band lengths:
211-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]