GgaEX6000887 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24067456-24068401:+
Coord C1 exon
chr1:24067456-24067629
Coord A exon
chr1:24067745-24067851
Coord C2 exon
chr1:24068264-24068401
Length
107 bp
Sequences
Splice sites
3' ss Seq
AATTATTTCTGTCCTTTCAGGAG
3' ss Score
9.95
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCAGTACAATGCCAGCAAGAAAAATGTGTGGCAATCCTGCTGGAGCACGGTGCTGATCCGAACTTGGCAGATGCTAACGGCAACACTGCCCTTCACCTGGCTGCTGTAGCTCCTAACACATTTCTAGCAGGGATGTTAATTGAGCACAATGCCCATATTGATGCTCAGAATAAG
Seq A exon
GAGGGATGTACTCCCCTTACTCTTGCTGTCTCTGAACATCATCAAGAGATGGTAGAGCTCCTTCTTAAAAAAGGAGCTGATGTTAATGCTCGAGATCTGTGTGAAAG
Seq C2 exon
AACTCCACTTATGACTGCTGCATCCGGTGGGGAGCTTAAGGTGGTAAAAGTTCTTCTTCGCTATGGTGCTGATCTTTCCCATAAAGACACTAATGGATGGACAGCTGAGGATTATGCTATTATTCATGGATATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(25.0=39.7),PF0002325=Ank=WD(100=56.9)
A:
PF138571=Ank_5=PU(27.3=41.7)
C2:
PF138571=Ank_5=PD(70.9=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAAGAAAAATGTGTGGCA
R:
GGGAAAGATCAGCACCATAGCG
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]