HsaEX0004403 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27375468-27382451:-
Coord C1 exon
chr10:27382278-27382451
Coord A exon
chr10:27381335-27381441
Coord C2 exon
chr10:27375468-27375538
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTGCTGTCTTACAGGAT
3' ss Score
12.23
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCTGTACAATGCCAGGAAGAGAAATGTGCAACTATTCTGCTAGAACATGGTGCTGATCCAAATCTTGCGGATGTCCATGGCAACACTGCTCTTCACTATGCTGTCTATAATGAGGACATATCAGTAGCAACAAAGCTGCTTTTGTATGATGCAAATATTGAAGCAAAAAACAAG
Seq A exon
GATGACCTCACACCACTTTTACTTGCAGTAAGTGGAAAAAAGCAGCAAATGGTGGAATTTTTAATAAAGAAAAAAGCAAATGTAAATGCAGTAGATAAGTTGGAAAG
Seq C2 exon
CAGTCACCAACTAATTTCAGAATATAAAGAAGAAAGGATACCTAAACATTCTTCTCAAAATAGTAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'4-6,'4-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.733
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(44.9=100),PF127962=Ank_2=PD(75.7=96.6)
A:
PF0002325=Ank=WD(100=91.7)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)