MmuEX6099288 @ mm10
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23212660-23230246:+
Coord C1 exon
chr2:23212660-23212833
Coord A exon
chr2:23226882-23226988
Coord C2 exon
chr2:23230109-23230246
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTGTTATTTTACAGGAC
3' ss Score
11.38
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GCTGTCCAAAGCTGGGAAGATAAAATCGTGTGTTTTCTGCTAGAGCACCATGCTAACCTGCACATTAAAGACAGCATGGGTAACACTGCTCTGCACTATGCTGTCTATAGCGGGAATTTAGCAACGGCTGCCAGGCTGCTACAGTACGGAGCAGATATTGAGGAAAGGACAAAA
Seq A exon
GACAACCTCACACCACTCTTGCTTGCTCTCAGGGAGAACAGACTGAAGATGGCACAATTCTTAGTAAGGATGGAAGCAAGCGTGCATGCAGTTGACTCACAGAGAAG
Seq C2 exon
AAATTCTCTCATGTATGCTGTAAGGTGTGACTCACCAGTTATGGTCAACCTTATTCTTCAACAAGGTGTCGACATAAATTTGAAAGATTTATTTGGATGGACTGCTTTACGTTATGCTATTGAAGGTGATCGTGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774-'2-5,'2-2,4-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(52.2=62.1)
A:
PF127962=Ank_2=PD(44.9=86.1),PF127962=Ank_2=PU(10.3=19.4)
C2:
PF136371=Ank_4=PU(87.8=76.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCATGCTAACCTGCACAT
R:
GCATAACGTAAAGCAGTCCATCC
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types