DreEX0000430 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3512694-3515548:-
Coord C1 exon
chr25:3515375-3515548
Coord A exon
chr25:3514756-3514862
Coord C2 exon
chr25:3512694-3512831
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGTTGGGGTTTGATTGACAGGAT
3' ss Score
6.18
5' ss Seq
GCGGTATGA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GCGGTTCAGTGTGAACAAGATCGCTCCGTCTCTTTGCTCCTGGAACACGAGGCCGATCCAAACCTGGTGGACATCAATGGAAACACAGCATTACACCTGTCTGCCCGCATCCCTTCTTTACCCGTAGCACTACAGCTCCTGGAGCACTCAGCCAACATCGACGCACAAAATAAG
Seq A exon
GATGGCAACACTCCACTGATGCTGGCTTTGATGGAAAACCACGCAGACATGACGGAGCTTTTACTGAAAGAGGGAGCGGATGTTAATGTCAAGAACCAGGAGCAGCG
Seq C2 exon
GTCTGCGTTGATGATAGCAGCGTGCAATGGACAAATCAGCATGGTGCGTTTGCTCCTTCAGTATGACGCCGACATTACAGTAAAAGATGACAAGGGATGGTCATCTGATGATTATGCCGTCATGAATGGACACCACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.167 C2=0.016
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(25.0=39.7),PF0002325=Ank=WD(100=56.9)
A:
PF0002325=Ank=WD(100=91.7),PF127962=Ank_2=PU(7.5=13.9)
C2:
PF127962=Ank_2=FE(54.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGAACAAGATCGCTCCG
R:
ATGTCGGCGTCATACTGAAGG
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]