BtaEX0004957 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018339 | ATP5G1
Description
Bos taurus ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) (ATP5G1), mRNA. [Source:RefSeq mRNA;Acc:NM_176649]
Coordinates
chr19:38255603-38257393:-
Coord C1 exon
chr19:38256165-38257393
Coord A exon
chr19:38255768-38255845
Coord C2 exon
chr19:38255603-38255651
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCCATGACCTTTCTTTACAGACC
3' ss Score
9.79
5' ss Seq
ATGGTTCGA
5' ss Score
2.04
Exon sequences
Seq C1 exon
AAAAGACAACGCGCCTCAGGGCCCGAGCGCTCGAATGAAGGCTAAGGTCCAAGGTCATGTGTTTGTCTGCGTAAGCCGTCCGGCCTCGCTCCCATGCCTTTTTCTTCAGCTTTGCACCTTGGCCGCCATTTTGTGGGGAAGGTTATGAAACCTCTTAGTCCAGCAGACTCTATGGTCGAGCACTTCAGAAACCGGCCAATCGGAAGCCAGATCTCAAAGGAAAACCCCGCCTTTGCCCTCATGGAGGCGGGAACTGCCACGAAGCTCCTGTGGAGAGAGAGAAAGAAGTTCCGCAAGACCAATAAGAAAGGAGGACTAGAGGGTGTTAACCAATGAAGGCGCGGGGGGATTGCGGCCAATGAGAGTTGGGGAACCCCGGGACACGTGGGTCCGGGAGCAGTGTGCCGAGTCCTAGAGCTAAAGCCGGGACGTGAGTCAGTCACCTTGAGCCGGGCGAGCGCTGTGGTCTGAGCAGGGGCAGCAGGGCAGTGGGAGTACAG
Seq A exon
ACCTGTCGCGCTGAAAGAGGTGGAACGGGAGTTTGCGCTGTCCCTCTGACCTCTAATGTTCTTCTCGGCTGGGGCATG
Seq C2 exon
ACTGAAAAAAATGCAGACCACCGGGGCACTACTCATTTCTCCTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018339_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAATGAGAGTTGGGGAAC
R:
CCCCGGTGGTCTGCATTTTT
Band lengths:
173-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development