BtaEX0004958 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018339 | ATP5G1
Description
Bos taurus ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) (ATP5G1), mRNA. [Source:RefSeq mRNA;Acc:NM_176649]
Coordinates
chr19:38253561-38257393:-
Coord C1 exon
chr19:38256165-38257393
Coord A exon
chr19:38255603-38255651
Coord C2 exon
chr19:38253561-38253775
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCCCCCCTCTGCAGACT
3' ss Score
11.8
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
AAAAGACAACGCGCCTCAGGGCCCGAGCGCTCGAATGAAGGCTAAGGTCCAAGGTCATGTGTTTGTCTGCGTAAGCCGTCCGGCCTCGCTCCCATGCCTTTTTCTTCAGCTTTGCACCTTGGCCGCCATTTTGTGGGGAAGGTTATGAAACCTCTTAGTCCAGCAGACTCTATGGTCGAGCACTTCAGAAACCGGCCAATCGGAAGCCAGATCTCAAAGGAAAACCCCGCCTTTGCCCTCATGGAGGCGGGAACTGCCACGAAGCTCCTGTGGAGAGAGAGAAAGAAGTTCCGCAAGACCAATAAGAAAGGAGGACTAGAGGGTGTTAACCAATGAAGGCGCGGGGGGATTGCGGCCAATGAGAGTTGGGGAACCCCGGGACACGTGGGTCCGGGAGCAGTGTGCCGAGTCCTAGAGCTAAAGCCGGGACGTGAGTCAGTCACCTTGAGCCGGGCGAGCGCTGTGGTCTGAGCAGGGGCAGCAGGGCAGTGGGAGTACAG
Seq A exon
ACTGAAAAAAATGCAGACCACCGGGGCACTACTCATTTCTCCTGCTCTG
Seq C2 exon
GAACCCGTCTCTGAAGCAGCAGCTCTTCTCCTATGCCATTCTGGGCTTTGCCCTGTCTGAGGCTATGGGGCTCTTCTGTTTGATGGTCGCCTTCCTCATCCTCTTCGCCATGTGAGGCTCCGTGGAAGTCACCTACCCACCCCTGCTGCTTCGACTCCAGGCCATGCCCGGTGCTGGAGTGTGCTAACCTTTACCATTAAACACAATGTTTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018339_MULTIEX1-2/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0013716=ATP-synt_C=PD(52.2=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCCGAGTCCTAGAGCTA
R:
GCATAGGAGAAGAGCTGCTGC
Band lengths:
137-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development