DreEX0015898 @ danRer10
Exon Skipping
Gene
ENSDARG00000017775 | atp5g3a
Description
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9), genome duplicate a [Source:ZFIN;Acc:ZDB-GENE-040426-857]
Coordinates
chr9:2336786-2339960:+
Coord C1 exon
chr9:2336786-2337182
Coord A exon
chr9:2337383-2337459
Coord C2 exon
chr9:2339886-2339960
Length
77 bp
Sequences
Splice sites
3' ss Seq
TATATGTTTTGTGTTTGCAGAAG
3' ss Score
8.5
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACAACAATAATTCATATTCTGACATTACTCTGAAGGTTAAATTTAGGGTTTGGCTAGAGGTATACTTTAATAAAATACAATTTAATAGTTAATATAATAAATAATGTGAATAATACACGGTATATTTACAGTTTTTACATTACTGTGAGGGTTGGGTTTAGGGGTAGACGTTAATAAAATACAGTTTAATGGGTAATATACTAAATAATGTAAATAATACGCGGTATAATTACTGTTTTTTTACATTACAGTGAGGGTTGAGTTTAGGAGTAGACGCTAATAAAATACAAAAATATAAACAATTCTCGTTAACTTCCTGCCACAGCTGTATCCCTTCTTTGACCTGAGTCAGTTGTGCGCACGCGCAGTTCAGCCGGTGGTTCGACCTCTGCTTTCG
Seq A exon
AAGTCCCGGGCCGCTCACAAACTCACTCATATTTCAAGATGTTCACCTGCGCAAAGTTCGTCTCCACACCTGCCCTG
Seq C2 exon
GTGCGTGCAGGCTCCAGGTCCGTGTACAGGCCAGTTTCTGCTGCTGTGCTTTCCAGACCAGAGGCCAAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017775-'1-5,'1-2,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTTAACTTCCTGCCACAGC
R:
CTCAGGTTTGGCCTCTGGTCT
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]