GgaEX1010002 @ galGal4
Exon Skipping
Gene
ENSGALG00000009286 | ATP5G3
Description
ATP synthase lipid-binding protein, mitochondrial isoform 1 [Source:RefSeq peptide;Acc:NP_001264784]
Coordinates
chr7:16150149-16151337:+
Coord C1 exon
chr7:16150149-16150231
Coord A exon
chr7:16150304-16150385
Coord C2 exon
chr7:16151260-16151337
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCCCTCTCTTCGCAGAGA
3' ss Score
12.8
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TCCGGGCGCCCGCCGCCGGTCCCGCCGCGCCTGCGCACAGCCGCGCTCAGCCCGTCAGCCCTGAGGAGCGGCAGCCGCAGAGG
Seq A exon
AGACGCCGGATCGTGGCCCCGGGGACGCCGCCCGCCCGCTAAGATGTTCGCCTGCGCCAAGCTCGCCGCTTCGCCCGCCCTG
Seq C2 exon
ATCCGCGCTGGATCGAGAATCTTGTACAGACCAATTTCAGCATCTGTGTTTTCTAGGCCAGAGGTCAGGACTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009286-'2-3,'2-0,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTCAGCCCTGAGGAG
R:
CTCTCCAGTCCTGACCTCTGG
Band lengths:
111-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]