MmuEX6102213 @ mm10
Exon Skipping
Gene
ENSMUSG00000018770 | Atp5g3
Description
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
Coordinates
chr2:73909864-73911326:-
Coord C1 exon
chr2:73911252-73911326
Coord A exon
chr2:73910955-73911060
Coord C2 exon
chr2:73909864-73909941
Length
106 bp
Sequences
Splice sites
3' ss Seq
AGCCTCTTTTCGCTCCGCAGAGA
3' ss Score
9.38
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
AAGAGCCGCACCGCGCTTGCGCGCCCAGCCCCACTGCTTCGACCTCTGCCGCCGCCACTGCCGCCGCCTCGGGAG
Seq A exon
AGAGGAAGCGGGAGAGGAGCCCACGTCGCCTGTCACCTAGATCCACGCCGCGCCGCCAGGAAGAAAGATGTTCGCCTGCGCCAAGCTCGCCCGCACCCCCGCTCTG
Seq C2 exon
ATCCGAGCTGGATCCAGAGTTGCATATAGACCAATTTCTGCATCAGTGTTATCTCGGCCAGAGACTAGGACTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018770-'0-8,'0-1,2-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACTGCTTCGACCTCT
R:
CTCCAGTCCTAGTCTCTGGCC
Band lengths:
123-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types